Detection of circulating tumor dna using double stranded hybrid capture

ABSTRACT

There is described herein a method for capturing circulating tumor DNA (ctDNA) of interest from an animal sample, preferably a mammalian sample, further preferably a human patient sample, comprising cell-free DNA (cfDNA), the method comprising: adding to the patient sample a library of nucleic acid hybrid capture probes, wherein the library of 5 probes is complementary to both strands of the double stranded ctDNA of interest and the probes are tagged for capture; allowing the probes to hybridize to the ctDNA; and capturing the hybridized ctDNA using the tag on the probes. Libraries of probes for use with these methods are also described.

RELATED APPLICATIONS

This application claims priority to U.S. Provisional Application No. 62/900,237, filed on Sep. 13, 2019, which is incorporated herein by reference in its entirety.

FIELD OF THE INVENTION

The invention relates to the detection of circulating tumor DNA, for example the detection of HPV circulating tumor DNA using hybrid capture.

BACKGROUND OF THE INVENTION

Recent methodological developments based on high throughput sequencing have expanded the potential applications for circulating tumor (ct)DNA analysis^(1,2). Many clinical settings—particularly those involving patients with low tumor burden—rely on accurate detection of minute levels of ctDNA within a much more abundant pool of cell-free (cf)DNA fragments. Further improvements in low-level ctDNA detection/analysis will have a tremendous impact on future cancer diagnostics for screening, prognostication, and treatment monitoring.

To drive ultrasensitive detection of ctDNA, we and others have developed approaches to increase the number of cancer-specific markers that can be simultaneously assessed in a given patient. By doing so, simulated data has suggested that dramatic gains may be achieved in the probability of detecting <1 genome equivalent (GE; see Methods) of ctDNA. This threshold has been shown to be clinically meaningful in low-disease-burden settings and can therefore be viewed as an important benchmark for ctDNA technological development.

Cancer types that are driven by oncogenic viruses, such as human papillomavirus (HPV)-associated cancers of the cervix and oropharynx, represent approximately 15% of the global cancer burden. In such cancers, the viral genome can be leveraged to distinguish ctDNA from other cellular sources of cfDNA¹⁰⁻²⁰. Most previous efforts have achieved this through quantitative or digital polymerase chain reaction (qPCR or dPCR)^(21,22), but robust detection of <1 GE has not been observed using these methods^(11,12,17,22,23). Viral genome hybrid capture sequencing has also recently shown promise as a means for ctDNA quantification while simultaneously providing qualitative information regarding sequenced cfDNA fragments, such as fragment length, that may improve the specificity of ctDNA detection.

SUMMARY OF THE INVENTION

Robust detection of circulating tumor (ct)DNA can play a role in cancer screening and measurement of minimal residual disease but has remained a challenge in these low-disease-burden settings. Here, we present a new approach for enhancing the recovery of low-level ctDNA by hybrid capture deep sequencing in human papillomavirus (HPV)-associated cancers. We performed hybridization to both sense and antisense baits tiled across the full-length double-stranded DNA HPV genome. This dual-strand hybrid capture procedure recovered fragments typically lost during standard hybrid capture sequencing, enabling reproducible detection of <1 genome equivalent of HPV ctDNA and 30-fold improved sensitivity over digital PCR. HPV-sequencing revealed qualitative information about ctDNA fragments such as HPV genotype, mapping location along the HPV genome, and ctDNA fragment length distribution, all of which can be utilized to improve the specificity of detection. Our findings will have implications for treatment monitoring of HPV-related cancers and could open the door to new potential clinical applications of HPV ctDNA analysis.

In an aspect, there is provided a method for capturing circulating tumor DNA (ctDNA) of interest from an animal sample, preferably a mammalian sample, further preferably a human patient sample, comprising cell-free DNA (cfDNA), the method comprising: adding to the patient sample a library of nucleic acid hybrid capture probes, wherein the library of probes is complementary to both strands of the double stranded ctDNA of interest and the probes are tagged for capture; allowing the probes to hybridize to the ctDNA; and capturing the hybridized ctDNA using the tag on the probes.

In an aspect, there is provided a library of probes complementary to both strands of a double stranded ctDNA of interest and the probes are tagged for capture.

BRIEF DESCRIPTION OF FIGURES

These and other features of the preferred embodiments of the invention will become more apparent in the following detailed description in which reference is made to the appended drawings wherein:

FIG. 1 : Overview of HPV-seq and dual-strand hybrid capture. (A) HPV-seq conducted on plasma cfDNA is designed to provide quantitative and qualitative information about ctDNA in patients with HPV-associated cancers. In addition to being highly sensitive and quantitative, HPV-seq can report on ctDNA fragment size and HPV genotype. Each full-length viral genome (episome or linearized genome) is expected to yield ˜50 distinct cfDNA fragments. (B) HPV-seq is conducted using hybrid capture sequencing with single-stranded (sense [+] and/or antisense [−]) biotinylated baits tiled across the HPV genome: (i) single strand viral genome hybrid capture; (ii) sequential dual strand hybrid capture; (iii) simultaneous dual strand hybrid capture. (C) Compared with single strand hybrid capture (i), dual strand hybrid capture using either a sequential (ii) or simultaneous (iii) approach recovers more HPV molecules. The degree of HPV DNA enrichment in post-capture libraries was determined using HPV-16 E6 and E7 dPCR assays. N=4 per condition. Error bars represent standard deviation. Asterisk indicates statistical significance (p<0.05) in comparison with single strand capture conditions.

FIG. 2 : Analytical sensitivity of HPV-seq. (A) HPV-seq was conducted on fragmented SiHa genomic DNA at the indicated dilution. Hybrid capture baits targeted the indicated HPV-16 sequences. The LLOD of HPV-seq was dependent on the use of dual-strand hybrid capture and the length of HPV-16 genome targeted by the baits. (B) HPV-seq with full-length dual-strand hybrid capture (blue) provided an improvement in analytical sensitivity and LLOD (0.003%) as compared with hybrid capture for a single mutation (1%). (C) Influence of multiple markers and sequencing depth on LLOD. Downsampling of HPV-seq data from full-length dual-strand hybrid capture demonstrates the dependence of the LLOD on the targeted length of HPV-16 genome (i.e., number of markers) (right y-axis) and the sequencing depth (x-axis). The probability of detecting the indicated number of HPV molecules (1—blue circles; 2—gray triangles; 5—yellow squares) is shown (left y-axis).

FIG. 3 : HPV ctDNA quantification from plasma cfDNA using HPV-seq. Comparison of dPCR (x-axis) and HPV-seq (y-axis) for 16 cervix cancer patient plasma cfDNA samples obtained at end-of-treatment or post-treatment shows strong correlation. Linear regression and its 95% confidence interval (shaded) are shown.

FIG. 4 : End-of-treatment detectable HPV ctDNA is associated with disease recurrence. (A) HPV ctDNA levels at the end-of-treatment timepoint obtained using HPV-seq are significantly higher among patients who subsequently relapsed (N=3) versus patients who remained disease-free (N=5). Horizontal bars indicate the median value and 1.5 times the interquartile range. (B) Progression-free survival according to HPV ctDNA status at the end-of-treatment timepoint. Detectable HPV ctDNA: dashed red line. Undetectable HPV ctDNA: solid blue line. Vertical hash marks indicated censoring.

FIG. 5 : Length distributions of human-mapping cfDNA and HPV-mapping ctDNA fragments. (A) Sequenced fragment insert sizes merged from HPV-seq positive patients analyzed at end-of-treatment or post-treatment (N=8). Samples (N=2) from patients with recurrence (B) and samples (N=6) from patients without recurrence (C) display similar ctDNA fragment size distributions. Samples from tumors harboring HPV-16 (N=6) (D) and HPV-33 (N=2) (E) are shown.

FIG. 6 : Optimal hybridization conditions for HPV-seq. Dual-strand full-length viral genome hybrid capture was conducted for 72 hr at 47° C. or for 18 hr at 65° C. Per bait concentrations were either 4,000 amol or 40,000 amol. Hybrid capture was performed in duplicate, and the degree of HPV DNA enrichment in post-capture libraries was determined using HPV-16 E6 and E7 dPCR assays. Results were normalized to the 72 hr at 47° C. condition with 4,000 amol per bait.

FIG. 7 : Analytical sensitivity of HPV-seq. Results from the dilution series presented in FIG. 2 b are displayed as genome equivalents (GE) of HPV DNA. Expected GE (x-axis) and observed GE from HPV-seq (y-axis) were highly correlated. The LLOD was 0.2 GE.

FIG. 8 : IGV snapshots for the 4 dPRC negative but HPV-seq positive end-of-treatment samples. The dual-strand full-length HPV-16 hybrid capture panel was used. Following processing of sequenced reads through ConsensusCruncher, unique (all.unique.dcs) reads were displayed as mapped to the HPV-16 genome.

DETAILED DESCRIPTION

In the following description, numerous specific details are set forth to provide a thorough understanding of the invention. However, it is understood that the invention may be practiced without these specific details.

Robust detection of circulating tumor (ct)DNA fragments can play a role in cancer screening and measurement of minimal residual disease but has remained a challenge in these low-disease-burden settings. For human papillomavirus (HPV)-associated malignancies, HPV DNA offers a convenient and relevant ctDNA marker. Digital PCR (dPCR) is the most common approach for HPV ctDNA detection, but the reported sensitivity and specificity of this current technology is likely insufficient for clinical applications in patients with low disease burden.

We developed a new next-generation sequencing approach (HPV-seq) for quantitative and qualitative assessment of HPV ctDNA fragments. Our approach involves enhanced recovery of viral sequences from plasma cell-free DNA by hybrid capture. Specifically, we performed hybridization to both sense and antisense (dual-strand) biotinylated DNA baits tiled across the full-length double-stranded DNA HPV genome. We evaluated the performance characteristics of HPV-seq using cancer cell lines and plasma cell-free DNA samples from a cohort of 8 locally-advanced cervix cancer patients (NCT02388698). HPV-seq results were compared with dPCR results from this cohort.

Dual-strand hybrid capture recovered 67-98% more HPV fragments than standard hybrid capture. This enabled reproducible detection using HPV-seq of <0.01% of HPV ctDNA in a cell line dilution series. In cervix cancer patients, HPV-seq and dPCR results were highly correlated (R=0.99, p=2.8×10⁻¹²) with HPV-seq detecting ctDNA at levels down to 0.004% (30-fold lower than dPCR) in dPCR-negative post-treatment samples. Accurate HPV genotyping was successful from 2/2 pre-treatment plasma samples, and HPV ctDNA was detected in 3/3 end-of-treatment plasma samples from patients with subsequent recurrence. HPV ctDNA fragment sizes were consistently shorter than non-cancer-derived cell-free DNA fragments (median 146 vs 169 bp, p<10⁻³²⁰) regardless of HPV genotype (HPV-16 vs HPV-33) or clinical setting (recurrence vs non-recurrence).

HPV-seq is a quantitative and sensitive method for ctDNA detection. HPV-seq also reveals qualitative information about ctDNA fragments such as HPV genotype and ctDNA fragment length distribution, which can be utilized to improve the specificity of detection (FIG. 1 a ). Our findings will have implications for treatment monitoring of disease burden in HPV-related cancers and could open the door to new potential clinical applications of HPV ctDNA analysis.

In an aspect, there is provided a method for capturing circulating tumor DNA (ctDNA) of interest from an animal sample, preferably a mammalian sample, further preferably a human patient sample, comprising cell-free DNA (cfDNA), the method comprising: adding to the patient sample a library of nucleic acid hybrid capture probes, wherein the library of probes is complementary to both strands of the double stranded ctDNA of interest and the probes are tagged for capture; allowing the probes to hybridize to the ctDNA; and capturing the hybridized ctDNA using the tag on the probes.

In some embodiments, the method further comprises polymerase chain reaction (PCR) assembly to detect a specific ctDNA of interest.

In some embodiments, the method further comprises sequencing the captured ctDNA. Preferably, the sequencing comprises next-generation sequencing. Further preferably, the next-generation sequencing comprises Illumina, Roche 454, or Ion Torrent Sequencing.

In some embodiments, the probes complementary to one strand of the ctDNA are offset by 40-60% from the probes complementary to other strand. Preferably, the probes complementary to one strand of the ctDNA are offset by 50% from the probes complementary to other strand.

In some embodiments, the probes are 50 bp to 160 bp in length, between 80 bp to 160 bp in length, between 100 bp and 140 bp in length, or about 120 bp in length.

In some embodiments, the ctDNA of interest corresponds to a mutation of interest.

In some embodiments, the ctDNA of interest corresponds to a virus, preferably an oncogenic virus. Preferably, the oncogenic virus is selected from the group consisting of human papillomavirus (HPV), Epstein-Barr virus (EBV), Kaposi's sarcoma-associated herpesvirus (KSHV), human T-lymphotropic virus (HTLV), or Merkle cell polyomavirus (MCV). In some embodiments, the oncogenic virus is human papillomavirus (HPV).

In some embodiments, the library of probes covers substantially the entire genome of the oncogenic virus.

In some embodiments, the method further comprises at least one of determining the fragment length of the ctDNA, genotyping the ctDNA, and mapping location of the ctDNA to the genome.

In some embodiments, the patient sample is selected from the group consisting of peripheral blood serum or plasma, urine, saliva, breast milk, cerebrospinal fluid, and synovial fluid. In a specific embodiment, the patient sample is peripheral blood plasma.

In some embodiments, the methods described herein are for detecting cancer.

In some embodiments, the methods described herein are for monitoring cancer therapy.

In an aspect, there is provided a library of probes complementary to both strands of a double stranded ctDNA of interest and the probes are tagged for capture.

In some embodiments, the probes complementary to one strand of the ctDNA are offset by 40-60% from the probes complementary to other strand. Preferably, the probes complementary to one strand of the ctDNA are offset by 50% from the probes complementary to other strand.

In some embodiments, the probes in the library are 50 bp to 160 bp in length, between 80 bp to 160 bp in length, between 100 bp and 140 bp in length, or about 120 bp in length.

In some embodiments, the ctDNA of interest corresponds to a virus, preferably an oncogenic virus. Preferably, the oncogenic virus is selected from the group consisting of human papillomavirus (HPV), Epstein-Barr virus (EBV), Kaposi's sarcoma-associated herpesvirus (KSHV), human T-lymphotropic virus (HTLV), or Merkle cell polyomavirus (MCV). In some embodiments, the oncogenic virus is human papillomavirus (HPV).

In some embodiments, the library of probes covers substantially the entire genome of the oncogenic virus.

The advantages of the present invention are further illustrated by the following examples. The examples and their particular details set forth herein are presented for illustration only and should not be construed as a limitation on the claims of the present invention.

EXAMPLES Methods and Materials Cell Lines

The SiHa cervix cancer cell line, which harbors a single integrated copy of HPV-16, was obtained from ATCC (Cat #HTB-35). The FaDu head and neck squamous cell carcinoma cell line, which is HPV-negative, was a kind gift of Dr. Bradly Wouters (Princess Margaret Cancer Center). The identity of all cell lines was confirmed via STR profiling, and mycoplasma testing was performed prior to their utilization. Genomic DNA was purified using DNeasy kits (Qiagen) and quantified by Qubit (Life Technologies).

Patients and Samples

This study was approved by the Ontario Cancer Research Ethics Board. Patients with locally advanced cervix cancer treated with standard-of-care chemoradiotherapy were accrued onto a prospective clinical trial (NCT02388698) for correlative biomarker analysis. Results of the primary analysis were previously reported¹⁴. Patients who consented to optional biobanking and with sufficient stored biospecimens were included in this study. Progression-free survival was measured from the date of diagnosis. The final cohort included 8 HPV-positive cervix cancer patients. Healthy donor plasma samples were obtained following the University Health Network's Research Ethics Board approval. Plasma processing, DNA extraction, and quality assessment were performed as previously described¹⁴.

Targeted Panel Design

For hybrid capture, panels of 5′-biotinylated 120 nt single-stranded DNA baits (xGen Lockdown probes) were designed and synthesized by IDT (Coralville, Iowa, USA). Each panel consisted of baits targeting HPV sequences as well as regions of 12 human genes frequently mutated in squamous cell carcinomas (CASP8, CDKN2A, EP300, FBXW7, HRAS, MAPK1, NFE2L2, NOTCH1, PIK3CA, PTEN, TERT, TP53). Six different HPV panels were used in this study: (i) HPV genotyping panel consisting of (+) strand baits targeting the E6 and E7 genes from each of 38 HPV types; (ii) HPV-16 (+) strand baits targeting the full-length viral genome; (iii) HPV-16 (−) strand baits targeting the full-length viral genome; (iv) HPV-33 (+) strand baits targeting the full-length viral genome. Baits were 1×tiled (end-to-end) for all full-length viral genome panels, and the HPV-16 (−) strand baits were 50% (60 nt) offset from the HPV-16 (+) strand baits.

Library Preparation

Illumina-compatible sequencing libraries were prepared from 20 ng of sheared cell line genomic DNA or cfDNA. Cell line genomic DNA was sheared using a Covaris® M220 sonicator (Covaris, Woburn, Mass., USA) followed by cleanup and size selection using Agencourt AMPure XP beads (Beckman Coulter, Brea, Calif., USA). DNA concentration was assessed by Qubit (Life Technologies, Carlsbad, Calif., USA). Sheared SiHa genomic DNA was spiked into sheared FaDu genomic DNA at 10% for initial methodological development and then as an 8-point dilution series (3%, 1%, 0.3%, 0.1%, 0.03%, 0.01%, 0.003%, and 0%) to test analytical sensitivity. Libraries were constructed using KAPA Hyper Prep kits (#KK8504, Kapa Biosystems, Wilmington, Mass., USA) with custom unique molecular identifier (UMI)-containing adapters. Following end repair and A-tailing, adapter ligation was performed overnight using 100-fold molar excess of adapters. Agencourt AMPure XP beads were used for library clean up and ligated fragments were amplified between 4-8 cycles using 0.5 μM IIluminal universal and sample specific index primers. Final library quality control was performed using a Bioanalyzer 2100 (Agilent, Santa Clara, Calif., USA), and concentration was measured using Qubit.

Hybrid Capture

Hybrid capture was conducted on ˜500 ng of amplified library without multiplexing. For initial methodological development, hybrid capture reactions were carried out with technical duplicates for each condition. Using the 10% SiHa DNA mixture, we evaluated the effect of individual probe concentration and hybridization temperature/duration on target sequence enrichment. Probes were included at either 4000 or 40,000 amol per probe. Hybridization was carried out at either 47° C. for 72 hr or at 65° C. for 18 hr. Thereafter, all other hybrid capture reactions were carried out with 4000 amol per probe at 65° C. for 18 hr. Hybrid capture reactions contained 5 μL of 1 mg/mL Cot-1 DNA and 1 nmol each of the IDT xGen Universal Blocking Oligos (TS-p5 and TS-p7, 8nt). The mixture was dried using a SpeedVac and then re-suspend in 1.1 μL water, 8.5 μL NimbleGen 2× hybridization buffer and 3.4 μL NimbleGen hybridization component A. The mixture was heat denatured at 95° C. for 10 min before adding 4 μL of IDT xGen Lockdown Probes (1000 amol/probe/μL). After 18 hr hybridization at 65° C., target of interests were captured by incubation with 5′-biotinylated oligos, and then were pulled down by Streptavidin M-270 Dynabeads (Thermo Fisher Scientific, Waltham, Mass., USA), followed by buffer wash steps to remove unbound DNA. Captured DNA was subjected to on-beads PCR amplification with 25 μL of 2× KAPA HiFi HotStart ReadyMix, 5 μL of 10 μM Illumina Primermix, and 20 μL of beads captured DNA. Amplified captured DNA was cleaned up with 1× Agencourt AMPure XP beads. Enriched libraries were eluted with TE buffer (IDTE pH 8.0) for downstream analysis. For sequential hybrid capture reactions, following initial hybridization and Streptavidin M-270 Dynabeads incubation, DNA bound to the Dynabeads was separated from the supernatant on a magnetic rack. The supernatant containing the unbound DNA was quickly transferred into another PCR tube for a second round of probe hybridization. Washing of the Dynabeads, on-beads PCR amplification, and DNA clean up was conducted as described above. Enriched libraries from sequential hybrid capture reactions were eluted with IDTE pH 8.0 into individual tubes for downstream analysis.

Target Sequence Enrichment Analysis

In order to determine the degree of target sequence enrichment in post-capture versus pre-capture libraries, we designed E6 and E7 primers/probe sets for dPCR. For HPV-16 E6: HPV16_E6_Forward, 5′-ACTGTGTCCTGAAGAAAAGCA; HPV16_E6_Reverse, 5′-GTCCACCGACCCCTTATATT; and a double quenched probe 5′-/56-FAM/ACATCTGGA/ZEN/CAAAAAGCAAAGATTCCA/3IABkFQ/. For HPV-16 E7: HPV16_E7_Forward, 5′-GAGGAGGATGAAATAGATGGTC; HPV16_E7_Reverse, 5′-CCGAAGCGTAGAGTCACA; and a double quenched probe 5′-/5HEX/TGGACAAGC/ZEN/AGAACCGGACA/31ABkFQ/. First, pre- and post-capture libraries were quantified using the dPCR Library Quantification Kit for Illumina Truseq (Bio-Rad, Cat. #1863040). All dPCR reactions were carried out using a QX200 Droplet Digital PCR system (Bio-Rad Laboratories, Hercules, Calif., USA). Thermocycling for 40 cycles was performed on a C1000 Touch Thermal Cycler with 96-Deep Well Reaction Module (Bio-Rad). Droplet analysis and copy number quantification was performed using QuantaSoft software (Bio-Rad). We prepared dilutions of 2 ng/μL for pre-capture libraries and 0.02 pg/μL for post-capture libraries; 5 μL of each diluted library was used for E6 and E7 absolute quantification by dPCR. The degree of enrichment of the E6 and E7 sequences was determined by dividing the concentration in post-capture libraries by the concentration in the pre-captured libraries.

Sequencing Analysis

High throughput DNA sequencing was performed on Illumina NextSeq500 or MiSeq platforms with paired-end reads of ≥75 bp. A 2 nt UMI and a 1 nt invariant spacer sequence were removed from each read³⁶. A thymine base was encoded in the third position for adapter ligation and a spacer filter was enforced to remove reads not compliant with this design. For the remaining reads (>98%), the UM Is were appended into the header for unique molecular identification. Next, reads were aligned to the human reference genome hg19 using BWA-mem (v 0.7.15)³⁷ and SAMtools (v 1.3.1)³⁸, and recalibrated for base quality score using the Genome Analysis ToolKit (GATK) BaseRecalibrator (v 3.4-46) according to the best practice. The aligned reads were input to ConsensusCruncher (https://github.com/pughlab/ConsensusCruncher) to identify unique molecules. ConsensusCruncher is a Python-based tool that amalgamates reads derived from the same DNA template labelled with the same UMI into a consensus read³⁶.

HPV Genotyping

Human-unmapped reads were extracted and aligned to a database of 38 HPV reference genomes (Table 5). The aligned reads were input to ConsensusCruncher to identify unique molecules. From these unique molecules, properly-paired reads with high mapping quality 30) were considered for genotyping. High mapping quality score was included in our pipeline to improve resolution of genotyping by filtering reads mapping to multiple genomes. Following these steps, the HPV genotype was assigned according to the virus with the most reads. Mutations in HPV sequences were evaluated in Integrated Genomics Viewer⁴⁰.

HPV Quantification

HPV quantification from full-length viral genome HPV-seq was based on the number of HPV-mapping reads or the HPV genome equivalents (GEs). The HPV GE was calculated by the formula, N (GE)=I (ng)×X %×10³/3.3, where N is the number of GE, I is the input DNA mass (e.g., 20 ng), X is the proportion of HPV-containing genomes in the input DNA. The estimation of X is based on the sequenced unique molecules of HPV and human DNAs. First, the human-unmapped reads were aligned to the HPV genotype-specific reference genome (e.g. HPV-16). Then, aligned reads were input to ConsensusCruncher to identify unique molecules. From the all unique molecules output of ConsensusCruncher, the number of HPV-mapping and (on-target) human-mapping properly-paired reads were determined. Here, no mapping quality control was applied to the HPV-mapping reads in order to maximize the recovery of all HPV-mapping reads (i.e., even reads that might map to multiple HPV genotypes). The proportion of HPV DNAs in the input DNA (i.e., the union of human and HPV DNAs) was estimated by comparing GATK DepthOfCoverage output from HPV-mapping and (on-target) human-mapping properly paired reads.

Fragment Length Analysis

Lengths of sequenced fragments were evaluated using CollectlnsertSizeMetrics of the Picard tool (http://broadinstitute.github.io/picard/). In this study, the input bam files were ‘all unique molecules’ generated by ConsensusCruncher. Human-mapping and HPV-mapping reads were analyzed separately for comparison.

Small Nucleotide Variant Calling

Mutation data from the SiHa and FaDu cell lines were obtained from the COSMIC database⁴¹. Within the 9 kb human gene capture panel that was part of HPV-seq, SiHa harbors one unique mutation within the CASP8 gene (chr2:202131411; c.202C>T). In the cell line dilution series, variants were called by intersecting output from iDES⁷ and Vardict 2⁴² with requirement of supporting reads.

Software and Statistical Analysis

Pearson correlation coefficients and p-values were calculated for dPCR and HPV-seq results using SciPy⁴³ in Python v3.7.2⁴⁴. The Student's t-test was used to test statistical significance of the degree of HPV sequence enrichment as well as differences in fragment lengths between human and HPV DNA fragments using R v3.5.1 (http://www.R-project.org/). Error bars and ranges indicate standard deviation. The probability of HPV detection in FIG. 2 was estimated based on 100-times downsamplings on each coverage level. For FIG. 3 , the linear regression with associated 95% confidence interval was generated using seaborn (https://doi.org/10.5281/zenodo.12710). For FIG. 2 , data was plotted using brokenaxes (https://qithub.com/bendichter/brokenaxes) and matplotlib v2.2.3 (https://doi.org/10.5281/zenodo.1343133). The Mann Whitney test was used to test differences in end-of-treatment HPV ctDNA levels between recurrent and non-recurrent patients. Kaplan-Meier analysis and log-rank test were performed in SAS v9.3 (SAS Institute, Cary, N.C., USA). All tests were two-tailed.

Results and Discussion

Enhanced Enrichment of Viral DNA from Sequencing Libraries

Efficient recovery of target sequences from cfDNA is necessary for robust ctDNA detection by hybrid capture sequencing. We first evaluated the degree of enrichment of HPV sequences using a range of hybrid capture conditions. Fragmented cell line genomic DNA containing 10% SiHa (cervix cancer cell line with single integrated full-length HPV-16 genome) was used to simulate cfDNA. Following construction of Illumina-compatible sequencing libraries, single-stranded sense (+) biotinylated DNA baits were used at a range of concentrations for hybrid capture. Increasing concentrations up to 4000 amol per bait produced greater enrichment (data not shown), but concentrations above 4000 amol per bait did not improve target recovery as measured by dPCR (FIG. 6 ). Moreover, at 4000 amol per bait, there was no significant impact on target recovery from increasing hybrid capture incubation time from 18 hr at 65° C. to 72 hr at 47° C. Thus, 4000 amol per bait with 18 hr incubation at 65° C. provided optimal experimental conditions that were utilized for all subsequent analyses.

Next, we asked whether the hybrid capture reaction had harvested all of the target sequences in the library. To test this, we examined the unbound library following hybrid capture to see whether there were retained HPV sequences. Subjecting the unbound library to another round of hybrid capture using the same single-stranded (+) baits had a minor impact on total target recovery (FIG. 1 b-c ), suggesting that the hybrid capture reaction had approached saturation as expected. However, substituting the (+) baits for staggered antisense (−) baits (see Methods) in the second round of hybrid capture resulted in a dramatic improvement in the degree of enrichment of target sequences (98±16% increase; p=3.1×10⁻⁴). This effect was maintained when the (+) and (−) baits were all combined in a single capture reaction (67±14% increase; p=1.8×10⁻³). Based on these results, dual-strand hybrid capture may improve upon standard target enrichment procedures for robust ctDNA detection.

HPV-Seq Enables Ultrasensitive Detection of Cancer DNA

Having established our hybrid capture methodology for HPV-seq, we next sought to evaluate its analytical sensitivity and lower limit of detection (LLOD). Reported qPCR/dPCR approaches for HPV ctDNA detection have LLOD of ≥GE=¹⁷, which may not be sufficient for low-disease-burden settings, so we tested the ability of HPV-seq to detect HPV DNA at levels <1 GE. HPV-seq with dual-strand full-length viral capture was able to detect SiHa DNA at 0.01% and 0.003%, corresponding to 0.6 and 0.2 GE, respectively, with no signal in the negative control (0%) condition (FIG. 2 a ), indicating robust LLOD at <1 GE. Of note, 16 unique HPV DNA fragments were recovered at the 0.003% dilution level, indicating that even lower levels might still be detectable. In contrast, single-strand full-length viral capture failed to detect SiHA DNA at 0.003%, and single-strand partial-length (360 bps within the E6 and E7 genes) viral capture did not detect SiHa DNA at either level.

We next compared the analytical sensitivity of HPV-seq to that of mutation detection following hybrid capture. The baits used for HPV-seq encompassed a single clonal heterozygous mutation in SiHa within the CASP8 gene, allowing us to evaluate LLOD in a dilution series. The LLOD using just the CASP8 mutation was only 1%, whereas HPV detection again provided a LLOD 0.003% and displayed a high correlation with the expected levels (R=0.997, p=4.2×10⁻⁰⁸; FIG. 2 b and FIG. 7 ). These results highlight the potential of utilizing HPV DNA fragments to drive analytical sensitivity.

When fragmented to the typical size of cfDNA (˜140-180 bp), the 7.9 kb HPV-16 genome should yield ˜50 independent cancer-specific markers. We reasoned that the LLOD in the SiHa dilution series would be dependent on this large number of independent markers of HPV-16. Indeed, the smaller E6/E7 capture baits failed to produce robust detection of SiHa DNA at <1 GE (FIG. 2 a ). To further test this hypothesis, we subsampled the sequencing reads from HPV-seq with dual-strand full-length viral capture conducted on 0.01%, 0.1%, and 1% fragmented SiHa DNA (FIG. 2 c ). Reads were subsampled at various depths of coverage ranging from 10- to 1000-fold. We evaluated reads mapping to 200 bp, 1600 bp, or the full-length 7904 bp HPV-16 genome to simulate the effect of variable numbers of independent markers on LLOD. As expected, the bait lengths for the HPV-16 genome increased the likelihood of HPV detection, with improved analytical sensitivity observed across the three dilution levels. Taken together, these results show the impact of dual-strand full-length viral capture on ultrasensitive detection of HPV.

HPV-Seq for ctDNA Detection and Genotyping in Cervix Cancer Patients

Uterine cervix cancer is one of several cancer types that is commonly HPV-associated. We previously evaluated the clinical utility of HPV genotype-matched dPCR from plasma cfDNA for treatment response monitoring in a cohort of locally advanced cervix cancer patients¹⁴. In this prospective multi-center series, baseline (pre-treatment) sensitivity was high, but the small dynamic range in longitudinal samples presented challenges for interpreting results at end-of-treatment or post-treatment. We therefore asked whether HPV-seq could improve upon the quantitative and qualitative information obtained from these plasma cfDNA samples. Of the 57 samples from the previous study, 18 samples were subjected to HPV-seq (Table 2) using either (i) a HPV genotyping panel (single-strand baits targeting the E6 and E7 genes from each of 38 HPV types; N=2), (ii) dual-strand full-length viral capture for HPV-16 (N=14), or (iii) single-strand full-length viral capture for other HPV types (N=2). The HPV genotyping panel (i) allowed us to test whether HPV-seq could provide HPV genotype information directly from plasma, while the full-length viral capture panels (ii, iii) were used to test HPV-seq as a monitoring tool for detecting residual disease. Considering all samples, HPV ctDNA levels detected by HPV-seq were correlated with dPCR results (R=0.99, p=7.9×10⁻¹⁴).

We evaluated the performance of HPV-seq for HPV genotyping from baseline plasma samples by comparing to cervical swab genotyping results previously reported for this cohort¹⁴. Both analysed patients harbored tumors positive for HPV-16. HPV ctDNA was detected in both samples but not in a healthy control sample. For each patient, between 80-100% of mapping reads were assigned to the same HPV genotype that was observed in the tumor tissue (Table 1). Considering the HPV genotype with the largest number of mapped reads, HPV-seq provided an overall accuracy of 100% for genotyping in this cohort. Of note, genotyping was possible even for samples with relatively low ctDNA levels (<10 copies by dPCR). These results suggest that HPV-seq using a broad genotyping panel could replace tumor tissue analysis for accurate HPV genotyping.

TABLE 1 HPV genotyping using HPV-seq Tissue HPV molecules from plasma HPV-seq^(#) Plasma HPV-seq HPV dPCR copy # HPV HPV HPV HPV HPV HPV type* accuracy Patient type E6 E7 16 18 31 33 35 45 HPV genotype P2 HPV-16 1.54 1.54 8 2 0 0 0 0 HPV-16  80% P6 HPV-16 6.16 22 84 0 0 0 0 0 HPV-16 100% Control — 0 0 0 0 0 0 0 0 — 100% ^(#)The number of properly-paired reads with high mapping quality score (≥30) on the HPV genome. *Plasma HPV genotype based on the viral genome with highest number of properly-paired mapped reads. HPV ctDNA Quantification in Cervix Cancer Patients

With the success of HPV-seq for genotyping from baseline samples, we next asked whether HPV-seq using full-length virus capture would enable treatment response monitoring. We subjected a total of 16 patient samples and 4 healthy control samples to HPV-seq using full-length virus capture. All patient samples were obtained either at end-of-treatment, 3 months post-treatment, or at the time of recurrence. HPV ctDNA levels according to HPV-seq and dPCR were highly correlated (R=0.99, p=2.8×10⁻¹²; FIG. 3 ). Three samples contained <1 GE of HPV with the lowest detected level by HPV-seq and dPCR at 0.24 GE (0.004%) and 1.69 (0.12%), respectively (Table 3). None of the 4 healthy control samples had detectable HPV-seq signal.

Of the 5 patient samples with dPCR-positive results (2 at end-of-treatment, 3 at post-treatment/recurrence), HPV-seq produced positive results in 4 (80%) samples (Table 3). The 1 sample with dPCR-positive HPV-seq-negative results had low dPCR values (˜1 copy) and was from a patient who remained disease-free with 43 months of follow up.

Of the 11 patient samples with dPCR-negative results, 7 (64%) were also negative by HPV-seq (Table 3). The 4 dPCR-negative HPV-seq-positive results were further analyzed to assess whether they represented false positive HPV-seq results. Of note, each of these 4 samples were at the end-of-treatment timepoint using the dual-strand full-length viral capture baits. Interestingly, one of these samples (from P5) displayed a low level of ctDNA (0.004%, 0.24 GE) 12 months prior to recurrence with a biopsy-proven solitary 1.2-cm lung metastasis, although the 3 months post-treatment sample from this patient was falsely negative by both HPV-seq and dPCR. None of the other 3 patients with dPCR-negative HPV-seq-positive results have experienced disease relapse after >36 months of follow up. Supporting the veracity of the HPV-seq results, the HPV-mapping reads were distributed across the HPV-16 genome (FIG. 8 ) and displayed high mapping quality scores (Table 3).

Three (P4, P5, and P7) of the 8 patients included in this study experienced disease recurrence. HPV ctDNA levels were on average higher at the end-of-treatment timepoint among those 3 patients compared with the 5 patients who did not relapse (p=0.23 FIG. 4 a ). With a median follow up of 27.5 months (range 4.8-48.6), detectable HPV ctDNA at the end-of-treatment timepoint was associated with poor progression-free survival (log-rank p=0.26; FIG. 4 b ). Sensitivity HPV-seq for predicting recurrence at the end-of-treatment timepoint was 100%.

ctDNA Fragment Lengths in Cervix Cancer Patients

Fragment lengths of sequenced cfDNA fragments may be useful for discriminating between healthy and malignant tissues-of-origin^(6,24-28). Shorter fragments have been observed in ctDNA from a variety of cancer types, including nasopharyngeal carcinoma and hepatocellular carcinoma, but this has not been previously evaluated in HPV-associated cancers. We compared HPV-mapping ctDNA fragment lengths to human-mapping cfDNA fragment from samples analyzed with full-length viral capture HPV-seq. HPV ctDNA displayed a median fragment size of 146 bp, which was 23 bp shorter than the median fragment size of human-mapping cfDNA (FIG. 5 a and Table 4). Of note, similar results were seen among samples taken at the time of recurrence (FIG. 5 b ) as well as samples taken from patients who have not recurred (FIG. 5 c ). Regardless of HPV genotype, median HPV ctDNA fragment length was shorter than human-mapping cfDNA (FIG. 5 d-e ). Taken together, along with HPV genotyping, these results illustrate the capability to perform qualitative analyses of ctDNA fragments using HPV-seq.

DISCUSSION

High analytical sensitivity is a prerequisite for a ctDNA test applied to oncology settings with low disease burden¹. Here, we validated the concept that simultaneous assessment of multiple cancer-specific markers in a given patient has a major impact on analytical performance of ctDNA testing. Specifically, we used HPV-associated cervix cancer as a highly relevant model, showing for the first time that HPV-seq using dual-strand full-length viral capture enables robust detection of <1 GE of ctDNA. We also showed that HPV-seq reveals qualitative information regarding ctDNA fragments such as HPV genotype, mapping location along the HPV genome, and ctDNA fragment length distribution that cannot be easily inferred from qPCR/dPCR.

Virus-associated cancers have long served as a model for ctDNA methodology development and clinical utility testing. Epstein-Barr virus (EBV) provides a convenient marker for nasopharyngeal and other cancers, but sensitivity and specificity shortfalls of the established qPCR test present barriers to its use for early detection and response monitoring³⁰⁻³². Recently, full-length viral capture sequencing was reported to improve the specificity of EBV detection in a prospective screening study. Ours is the first study to show the potential for this approach to also drive greater sensitivity in virus-associated cancers.

Despite its limitations, the plasma EBV DNA qPCR test continues to be employed clinically and in trials. The sensitivity of this test is aided by targeting of a conserved amplicon in the EBV genome. The HPV genome, however, does not harbor any repeated sequences that lend themselves to more sensitive qPCR/dPCR assays. Moreover, distinct high-risk oncogenic HPV genotypes have widely divergent sequences. These features make HPV detection ideal for hybrid capture sequencing methods due to the flexibility for incorporating hundreds of baits spanning the entire genome of multiple viral genotypes.

We found that dual-strand capture was a key element for enabling robust detection of <1 GE of ctDNA. While single-strand and partial-genome viral capture were also able to produce quantitative and qualitative HPV-seq results in our study, the most robust ultrasensitive ctDNA detection was achieved using dual-strand full-length viral capture. Sequential capture of the complementary strands was feasible but laborious, so we instead implemented an approach for simultaneous dual-strand capture using staggered reverse-complementary baits. This approach is applicable to any hybrid capture sequencing workflow and, importantly, could therefore have an immediate impact for ctDNA applications in other cancer types as well.

Locally advanced cervix cancer is managed with concurrent chemoradiotherapy. The role of subsequent adjuvant therapy is currently being evaluated in multiple international clinical trials (e.g., NCT00980954, NCT01414608, NCT02036164, NCT0270396, NCT02853604, and NCT03468010). We previously reported on the capability of HPV genotype-specific dPCR from end-of-treatment plasma cfDNA to pre-date clinical recurrence in locally advanced cervix cancer patients. From that study, we found low levels of HPV ctDNA using dPCR in the end-of-treatment timepoint from 3 patients who have remained disease-free. Using HPV-seq, 2 of these 3 samples had no detectable HPV fragments, suggesting that they may have been false-positive dPCR results. Conversely, 4 (36%) of the dPCR-negative surveillance samples harbored residual HPV ctDNA fragments detectable by HPV-seq. This again occurred specifically in the end-of-treatment samples, including from 3 patients who have remained disease-free. Importantly, there were no qualitative attributes (mapping quality, fragment length) of HPV DNA fragments in these samples that would easily distinguish them from the dPCR-positive samples, suggesting that these represented bona fide ctDNA molecules.

There is no current standard timepoint for minimal residual disease ctDNA testing in chemoradiotherapy-treated patients. Based on our results, at the end-of-treatment timepoint sensitivity was excellent (100%) for minimal residual disease detection using HPV-seq. If this high sensitivity is confirmed in larger studies, patients with undetectable end-of-treatment ctDNA levels using HPV-seq could be candidates for observation and thus spared adjuvant therapy or intensive surveillance. However, a positive end-of-treatment result might not guarantee subsequent recurrence and could necessitate repeat testing or else alternative surveillance procedures (e.g., medical imaging). Future studies should also consider later timepoints (e.g., 4-6 weeks post-treatment) to allow for additional clearance of residual ctDNA from effectively treated tumor cells.

The findings of this study will require validation in larger cohorts to confirm the clinical utility for quantitative and qualitative ctDNA analysis using HPV-seq. Future studies will also need to expand the utility of HPV-seq to other HPV associated cancers including oropharynx cancer and anogenital cancer types. The addition of other orthogonal markers of HPV in the circulation such as antibodies or cfDNA methylation patterns may lead to more refined and robust biomarker panels for measuring disease burden and response to therapy in HPV-associated cancers. Application of our methods to cancer screening settings should also be explored.

In conclusion, HPV-seq enables ultrasensitive detection and qualitative analysis of cervix cancer ctDNA. This study will have implications for treatment monitoring of HPV-related cancers and could open the door to new potential clinical applications of HPV ctDNA analysis, including for early detection and minimal residual disease testing.

Although preferred embodiments of the invention have been described herein, it will be understood by those skilled in the art that variations may be made thereto without departing from the spirit of the invention or the scope of the appended claims. All documents disclosed herein, including those in the following reference list, are incorporated by reference.

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TABLE 2 Patients, timepoints, and the sequencing panels used in this study. Patient Pre-treatment End-of-treatment 3MFU Recurrence 3MFU/RECR Control P1 — HPV16(+)&(−) HPV16(+)&(−) — — — P2 HPV E6&E7(+) HPV16(+)&(−) HPV16(+)&(−) — — — P3 — HPV16(+)&(−) HPV16(+)&(−) — — — P5 — HPV16(+)&(−) HPV16(+)&(−) HPV16(+)&(−) — — P6 HPV E6&E7(+) HPV16(+)&(−) HPV16(+)&(−) — — — P7 — HPV16(+)&(−) — — — — P8 — HPV16(+)&(−) HPV16(+)&(−) — — — P4 — HPV33(+) — — HPV33(+) — cfDNA — — — — — all panels Abbreviation: 3MFU = 3 month post-treatment follow up; RECR = recurrence

TABLE 3 ctDNA quantification using full-length viral capture HPV-seq for 34 plasma cfDNA samples from cervix cancer patients Tissue Plasma HPV-seq attributes HPV dPCR copy # MAPQ > Patient Timepoint type E6 E7 # HPV 30 % HPV GE HPV dPCR Positive Samples P4 end-of-treatment HPV-33 389.25 342 33674 98.2% 10.07% 671.06 P7 end-of-treatment HPV-16 39.6 33 11696 99.8%  2.70% 180.19 P4 3MFU/RECR HPV-33 45 40.5 6342 98.4%  1.52% 101.46 P5 RECR HPV-16 0 3.375 450 99.7%  0.12% 8.06 P6 3MFU HPV-16 1.8 0 0 0    0% 0 HPV dPCR Negative Samples P8 end-of-treatment HPV-16 0 0 94 98.9%  0.04% 2.56 P1 end-of-treatment HPV-16 0 0 44  100%  0.02% 1.32 P3 end-of-treatment HPV-16 0 0 24  100%  0.01% 0.68 P5 end-of-treatment HPV-16 0 0 10  100% 0.004% 0.24 P1 3MFU HPV-16 0 0 0 —    0% 0 P2 end-of-treatment HPV-16 0 0 0 —    0% 0 P2 3MFU HPV-16 0 0 0 —    0% 0 P3 3MFU HPV-16 0 0 0 —    0% 0 P5 3MFU HPV-16 0 0 0 —    0% 0 P6 end-of-treatment HPV-16 0 0 0 —    0% 0 P8 3MFU HPV-16 0 0 0 —    0% 0 Abbreviation: 3MFU = 3 month post-treatment follow up; RECR = recurrence

TABLE 4 Fragment length distributions for sequenced human and HPV DNAs HPV # Fragments Median Δ fragment Patient Timepoint type Human HPV Human HPV length p-value Individual Patient Samples HPV dPCR Positive P4 end-of-treatment HPV-33 138270 10035 166 143 23  5.7 × 10⁻³²¹ P7 end-of-treatment HPV-16 197669 3710 166 153 13  1.4 × 10⁻²¹⁸ P4 3MFU/RECR HPV-33 197744 1969 171 150 21  5.9 × 10⁻¹²⁵ P5 RECR HPV-16 153455 125 167 150 17  3.1 × 10⁻⁰⁷ HPV dPCR Negative Samples P8 end-of-treatment HPV-16 122680 33 168 180 −12 0.01 P1 end-of-treatment HPV-16 110289 13 171 155 16 0.2 P3 end-of-treatment HPV-16 113824 9 175 135 40 0.04 P5 end-of-treatment HPV-16 144870 3 174 133 41  <1 × 10⁻³²⁰ Groups HPV HPV- 842787 3893 169 153 16  <1 × 10⁻³²⁰ HPV- 336014 12004 168 144 22  <1 × 10⁻³²⁰ Timep end-of-treatment 827602 13803 169 146 23  <1 × 10⁻³²⁰ RECR 351199 2094 169 150 19  1.8 × 10⁻⁸⁶ Panel Single-strand 336014 12004 168 144 22  <1 × 10⁻³²⁰ Dual-strand 842787 3893 169 153 16  <1 × 10⁻³²⁰ Abbreviation: 3MFU = 3 month post-treatment follow up; RECR = recurrence

TABLE 5 38 HPV genomes interrogated by the HPV genotyping panel HPV genome HPV name gi|333071 Human papillomavirus 5 (HPV-5) gi|60955 Human papillomavirus 6 (HPV-6) gi|333026 Human papillomavirus 11 (HPV-11) gi|396910 Human papillomavirus 12 (HPV-12) gi|333031 Human papillomavirus 16 (HPV-16) gi|60975 Human papillomavirus 18 (HPV-18) gi|9627305 Human papillomavirus 26 (HPV-26) gi|333048 Human papillomavirus 31 (HPV-31) gi|333049 Human papillomavirus 33 (HPV-33) gi|396997 Human papillomavirus 35 (HPV-35) gi|1020234 Human papillomavirus 38 (HPV-38) gi|333245 Human papillomavirus 39 (HPV-39) gi|397014 Human papillomavirus 40 (HPV-40) gi|333211 Human papillomavirus 42 (HPV-42) gi|397022 Human papillomavirus 45 (HPV-45) gi|333087 Human papillomavirus 51 (HPV-51) gi|397038 Human papillomavirus 52 (HPV-52) gi|9627377 Human papillomavirus 53 (HPV-53) gi|9628437 Human papillomavirus 54 (HPV-54) gi|396937660 Human papillomavirus 55 (HPV-55) gi|397053 Human papillomavirus 56 (HPV-56) gi|222386 Human papillomavirus 58 (HPV-58) gi|557236 Human papillomavirus 59 (HPV-59) gi|9628574 Human papillomavirus 61 (HPV-61) gi|39932599 Human papillomavirus 62 (HPV-62) gi|1020290 Human papillomavirus 66 (HPV-66) gi|3228267 Human papillomavirus 67 (HPV-67) gi|71726685 Human papillomavirus 68 (HPV-68) gi|6970418 Human papillomavirus 69 (HPV-69) gi|1173493 Human papillomavirus 70 (HPV-70) gi|12084981 Human papillomavirus 71 (HPV-71) gi|1491683 Human papillomavirus 72 (HPV-72) gi|1491692 Human papillomavirus 73 (HPV-73) gi|40804509 Human papillomavirus 81 (HPV-81) gi|6970427 Human papillomavirus 82 (HPV-82) gi|5059324 Human papillomavirus 83 (HPV-83) gi|12958167 Human papillomavirus 84 (HPV-84) gi|50253426 Human papillomavirus 96 (HPV-96)

E6E7Genotyping Length SEQ Panel_SequenceName Sequence Length ID#: gi|020234.E6| ACCCTGTAGATTCTGCAACAGTT 120 1 lcl|HPV38_E6.1 TCCTCACGTACATTGAATTACGT Human papillomavirus GAGTTTGATTACAAGAACTTACA 38 (HPV38), GTTAATCTGGACTCAAGA E6 gene_1 GGATTTTGTTTTTGCATGTTGTA GCAGTTGTGC gi|1020234.E6| GCAACAGACAATAGGCCTTATTG 120 2 lcl|HPV38_E6.1| TTATAAGGTGTCAGTATTGTTTA Human papillomavirus AAGTGTCTTGATTTGATAGAAAA 38 (HPV38), ATTAGATATCTGTTGCTCT E6 gene_2 CATCAAGCATTTCACAAGGTTAG AGGCAATTG gi|1020290.E6| TTTACTTGATCTTAGATTATCAT 120 3 lcl|HPV66_E6.1 GTGTATACTGCAAAAAGGAACTT Human papillomavirus ACAAGTTTAGAGCTATATAGGTT 66 (HPV66), TGCATGTATTGAGTTAAAAC E6 gene_1 TAGTATATAGAAACAATTGGCCA TATGCAGT gi|1020290.E6| ATTAGAAAGTATAACTAAAAAAC 120 4 lcl|HPV66_E6.1 AGTTATCTGATTTATCAATAAGG Human papillomavirus TGCTACCGATGTCAATGTCCGTT 66 (HPV66), AACACCGGAGGAAAAACA E6 gene_2 ATTGCACTGTGAACATAAAAGAC GATTTCATTA gi|1173493.E6| GCACGACATTACAATAGACTGTG 120 5 lcl|HPV70_E6.1 TCTATTGTAAAACACAGCTACAG Human papillomavirus CAAACAGAGGTATATGAATTTGC 70 (HPV70), ATTTAGTGATTTATTTATA E6 gene_1 GTATATAGAAACGGGGAGCCATA TGCTGCATG gi|1173493.E6| GGAAAGCATAACTAATACCAAGT 120 6 lcl|HPv70_E6.1| TATATAATTTATCAATAAGGTGC Human papillomavirus ATGAGTTGCCTGAAACCATTGTG 70 (HPV70), TCCAGCAGAAAAATTAAG E6 gene_2 GCATGTTAATACCAAAAGAAGAT TTCACCAAAT gi|12084981.E6| GTACGACGTGGACCTGCAGGACC 120 7 lcl|HPV71_E6.1| TGAACCTAACCTGCATATTCTGC Human papillomavirus AGAAATCAATTAACAGACGTGGA 71 (HPV71), AGTCGTGGCCTTTGCAT E6 gene_1 ATAAGGAGCTGAAAGTTGTGTGG AGAAGTGGTTT gi|12084981.E6| CTTTGCAAACACAGTGGAATTAG 120 8 lcl|HPV71_E6.1| ACACCGGAACGCCAGTTACAGAG Human papillomavirus CAACTAATACGGTGCTACGTGTG 71 (HPV71), TCACAAGCCATTGTGTA E6 gene_2 GTGTGGAAAAAGAAAGAATAATT ACAGAAGGCAG gi|12958167.E6| ACGATTAATTTGCATCTTTTGCA 120 9 lcl|HPV84_E6.1| AGGAAGAATTAACGGAAGGCGAA Human papillomavirus GTGCTGGCCTTTGCAGTAAAGGA 84 (HPV84), ATTACTAATTGTTTGGAG E6 gene_1 GTATAATTTCCCTCATGGGGTGT GCATGAAATG gi|12958167.E6| AACAGGATTACCACTTGCACAAA 120 10 lcl|HPV84_E6.1| TAAATATAAGGTGCCACGCGTGC Human papillomavirus TGCAAGCCATTGTGCTATCAGGA 84 (HPV84), AAAGGAGTATATGGTGG E6 gene_2 AATTGCAGTTGCTATTCCACAAA ATAGCTGGACA gi|1491683.E6| ACGGATTACCTGCATATTTTGCA 120 11 lcl|HPV72_E6.1| AAAATGAATTAACAACAGAAGAA Human papillomavirus TTGCTGGCGATTGCAATAAAGGA 72 (HPV72), GCTGCAGATTGTGTGGC E6 gene_1 GGGACAACTGGCCATTTGGAGTC TGCGCACCATG gi|1491683.E6| AACAGGCAAATCATTAGCAGAAC 120 12 lcl|HPV72_E6.1 TATATATAAGGTGCCATGCATGC Human papillomavirus TGCAAACCCCTAAGCTGTCAGGA 72 (HPV72), AAAGGAATATCAGGTGC E6 gene_2 AGACAGGAATCCACTTCCACAAG ATAAGCGGACT gi|1491692.E6| TGATATAAACCTGGACTGTGTGT 120 13 lcl|HPV73_E6.1| TTTGCCAACGTGGACTGTACAGA Human papillomavirus TCTGAGGTATATGATTTTGCATT 73 (HPV73), TAGTGATTTGTGTATTGTA E6 gene_1 TATAGAAAGGATAAACCATATGG TGTATGTCA gi|1491692.E6| AAATTTAACTAACAAACAGTTAT 120 14 lcl|HPV73_E6.1 GTAATATTTTAATAAGGTGCGGA Human papillomavirus AAATGCCAAAAACCATTATGTCC 73 (HPV73), ACTGGAAAAGCAAAAGCAT E6 gene_2 GTAGATGAAAAAAAACGGTTTCA TCAAATAGC gi|222386.E6| AATCGAATTGAAATGCGTTGAAT 120 15 lcl|HPV58_E6.1| GCAAAAAGACTTTGCAGCGATCT Human papillomavirus GAGGTATATGACTTTGTATTTGC 58 (HPV58), AGATTTAAGAATAGTGTAT E6 gene_1 AGAGATGGAAATCCATTTGCAGT ATGTAAAGT gi|222386.E6| AACACTAAAAAAGTGTTTAAATG 120 16 lcl|HPV58_E6.1| AAATATTAATTAGATGTATTATT Human papillomavirus TGTCAAAGACCATTGTGTCCACA 58 (HPV58), AGAAAAAAAAAGGCATGTG E6 gene_2 GATTTAAACAAAAGGTTTCATAA TATTTCGGG gi|3228267.E6| AATAAGTTTGCCCTGCGTGCAGT 120 17 lcl|HPV67_E6.1 GCAAAAAAACTTTGGACAGAAAC Human papillomavirus GAGGTATATGACTTTTTATTTAC 67 (HPV67), TGATTTGAAAATAGTATAC E6 gene_1 AGATGTGGGAATCCGTATGGGGT ATGTAAGCA gi|3228267.E6| AATTGTGCATAAACCATTAAATG 120 18 lcl|HPV67_E6.1 AAATTACAATACGATGTATAACA Human papillomavirus TGTCAAAGACCATTGTGTCCACA 67 (HPV67), AGAAAAGCAAAGGCATGT E6 gene_2 TGATCGCAAAAAGCGATTTCATA ATATTTCCAA gi|333026.E6| CACTCTGCAAATTCAGTGCGTGT 120 19 lcl|HPV11_E6.1| TTTGCAGGAATGCACTGACCACC Human papillomavirus GCAGAGATATATGCATATGCCTA 11 (HPV11), TAAGAACCTAAAGGTTG E6 gene_1 TGTGGCGAGACAACTTTCCCTTT GCAGCGTGTGC gi|333026.E6| AGAAGAAACCAATGAAGATATTT 120 20 lcl|HPV11_E6.1| TAAAAGTGTTAATTCGTTGTTAC Human papillomavirus CTGTGTCACAAGCCGTTGTGTGA 11 (HPV11), AATAGAAAAACTAAAGCA E6 gene_2 CATATTGGGAAAGGCACGCTTCA TAAAACTAAA gi|333031 E6| GCTGCAAACAACTATACATGATA 120 21 lcl|HPV16_E6.1| TAATATTAGAATGTGTGTACTGC Human papillomavirus AAGCAACAGTTACTGCGACGTGA 16 (HPV16), GGTATATGACTTTGCTTTT E6 gene_1 CGGGATTTATGCATAGTATATAG AGATGGGAA gi|333031.E6| GTATGGAACAACATTAGAACAGC 120 22 lcl|HPV16_E6.1| AATACAACAAACCGTTGTGTGAT Human papillomavirus TTGTTAATTAGGTGTATTAACTG 16 (HPV16), TCAAAAGCCACTGTGTCC E6 gene_2 TGAAGAAAAGCAAAGACATCTGG ACAAAAAGCA gi|333048.E6| ACTAAGATTGAATTGTGTCTACT 120 23 lcl|HPV31_E6.1| GCAAAGGTCAGTTAACAGAAACA Human papillomavirus GAGGTATTAGATTTTGCATTTAC 31 (HPV31), AGATTTAACAATAGTATAT E6 gene_1 AGGGACGACACACCACACGGAGT GTGTACAAA gi|333048.E6| ATTGACAAACAAAGGTATATGTG 120 24 lcl|HPV31_E6.1| ATTTGTTAATTAGGTGTATAACG Human papillomavirus TGTCAAAGACCGTTGTGTCCAGA 31 (HPV31), AGAAAAACAAAGACATTT E6 gene_2 GGATAAAAAGAAACGATTCCACA ACATAGGAGG gi|333049.E6| CATTGAACTACAGTGCGTGGAAT 120 25 lcl|HPV33_E6.1| GCAAAAAACCTTTGCAACGATCT Human papillomavirus GAGGTATATGATTTTGCATTTGC 33 (HPV33), AGATTTAACAGTTGTATAT E6 gene_1 AGAGAGGGAAATCCATTTGGAAT ATGTAAACT gi|333049.E6| AACAGTTAAAAAACCTTTAAATG 120 26 lcl|HPV33_E6.1| AAATATTAATTAGGTGTATTATA Human papillomavirus TGTCAAAGACCTTTGTGTCCTCA 33 (HPV33), AGAAAAAAAACGACATGTG E6 gene_2 GATTTAAACAAACGATTTCATAA TATTTCGGG gi|333071.E6| CTTAGCTGAAGCCTTAGGCATCC 120 27 lcl|HPV5_E6.1| CTGTGATTGATTGTTTAATACCT Human papillomavirus TGCAATTTCTGTGGCAACTTTCT 5 (HPV5), AAATTATTTGGAAGCTTGT E6 gene_1 GAATTCGACTACAAAAGGCTTAG TCTAATTTG gi|333071.E6| TGAGCAGACAGTGTTAGGAAGAG 120 28 lcl|HPV5_E6.1| ATATTGAATTAGCTTCAGGACTT Human papillomavirus TCAATATTTGATATTGATATCAG 5 (HPV5), GTGTCAAACTTGCTTAGCA E6 gene_2 TTTCTTGACATTATAGAAAAGTT AGATTGCTG gi|333087.E6| TATACAGGTAGTGTGTGTGTATT 120 29 lcl|HPV51_E6.1| GTAAAAAGGAATTATGTAGAGCA Human papillomavirus GATGTATATAATGTAGCATTTAC 51 (HPV51), TGAAATTAAGATTGTATATA E6 gene_1 GGGATAATAATCCATATGCAGTA TGCAAACA gil333087.E6| AATTACTAAAAAAAGCTTATATG 120 30 lcl|HPV51_E6.1 ATTTATCGATAAGGTGTCATAGA Human papillomavirus TGTCAAAGACCACTTGGGCCTGA 51 (HPV51), AGAAAAGCAAAAATTGGT E6 gene_2 GGACGAAAAAAAAAGGTTCCATG AAATAGCGGG gi|333211 .E6| GAATTTACAGATTTCCTGCATTT 120 31 lcl|HPV42_E6.1| GGTGCAAAAAGCACTTAACAGGC Human papillomavirus GCAGAGGTGCTCGCGTACCATTT 42 (HPV42), TAAAGATTTGGTAGTGGT E6 gene_1 GTGGAGGAAGGACTTTCCATATG CTGCATGTGC gi|333211.E6| GAAAGAAACTGGACTACTTTTAG 120 32 lcl|HPV42_E6.1| AAGAACAACAAATTAGATGTGCC Human papillomavirus TTGTGTCAAAAGCCGTTATCACA 42 (HPV42), GAGCGAAAAAAACCATCA E6 gene_2 TATTGATACAGGTACAAGATTTC AATTTATATT gi|333245.E6| GCAGGACATTACAATAGCCTGTG 120 33 lcl|HPV39_E6.1| TCTATTGCAGACGACCACTACAG Human papillomavirus CAAACCGAGGTATATGAATTTGC 39 (HPV39), ATTTAGTGATTTATATGT E6 gene_1 AGTATATAGGGACGGGGAACCAC TAGCTGCATG gi|333245.E6| AGAAAATATAACTAATACAAAGT 120 34 lcl|HPV39_E6.1| TATATAATTTATTAATAAGGTGC Human papillomavirus ATGTGTTGTCTGAAACCGCTGTG 39 (HPV39), TCCAGCAGAAAAATTAAGA E6 gene_2 CACCTAAATAGCAAACGAAGATT TCATAAAAT gi|396910.E6| TGACCTTTTAGATATACCTTTAG 120 35 lcl|HPV12_E6.1| TTGACTGTTTGGTACCTTGCAAT Human papillomavirus TTTTGCGGAAAGTTCTTAGATTT 12 (HPV12), TCTGGAAGTGTGTGATTTTG E6 gene_1 ACAAAAAGCAGCTAACACTAATT TGGAAAGG gi|39691O.E6| AACAGTGCTAGGTAGAGATATAG 120 36 lcl|HPV12_E6.1| AGCTTGCTACTGGAAAATCTATA Human papillomavirus TTTGACTTAAAGATAAGGTGTCA 12 (HPV12), GACGTGCTTGTCATTTTTA E6 gene_2 GATACAATTGAAAAGTTAGACAG CTGTGGTCG gi|396937660|emb| CCATTTGCAAATTTTATGCGTGT 120 37 HE963220.11 TTTGCAGAAAAACCTTGACCACT Human papillomavirus GCAGAGGTTTATTCATTCGCATA type 55 TAAACAGTTATATGTAGTG (HPV55) E6 gene, TTTCGAGGTAACTTTCCATTTGC isolate CAC1126-10_1 AGCCTGTGC gi|396937660|emb| AGAAGAGACAAAGCAGTCAATTT 120 38 HE963220.11 TGGACGTGTTCATACGCTGTTAT Human papillomavirus TTGTGCCACAAACCATTGTGCCA type 55 CGTGGAAAAGGTGCGCC (HPV55) E6 gene, ACATATTGGAGAAGGCGCGATTT isolate CAC1126-10_2 ATTAAATTACA gi|396997.E6| AATTTGTTTGAATTGTGTATACT 120 39 lcl|HPV35_E6.1| GCAAACAAGAATTACAGCGGAGT Human papillomavirus GAGGTATATGACTTTGCATGCTA 35 (HPV35), TGATTTGTGTATAGTATAT E6 gene_1 AGAGAAGGCCAGCCATATGGAGT ATGCATGAA gi|396997.E6| ACAATGCAACAAACAGTTATGTC 120 40 lcl|HPV35_E6.1| ATTTATTAATTAGGTGTATTACA Human papillomavirus TGTCAAAAACCGCTGTGTCCAGT 35 (HPV35), TGAAAAGCAAAGACATTTA E6 gene_2 GAAGAAAAAAAACGATTCCATAA CATCGGTGG gi|397014.E6| GTTGCAAATTGATTGTGTGTTTT 120 41 lcl|HPV40_E6.1| GCAAGACGGTCCTAAAAACAGCT Human papillomavirus GAGGTACTGGCCTTTGCCTTTAG 40 (HPV40), AGAGTTATATGTTGTGTG E6 gene_1 GCGCGACGACTTTCCACACGCCG CATGTCCACG gi|397014.E6| AGAGACAGGATTAACCATTTTAC 120 42 lcl|HPV40_E6.1| AAGTAAGGATTAGATGCTGCAAG Human papillomavirus TGCCACAAGCCTTTGTCTCCCGT 40 (HPV40), GGAAAAAACCAACCATA E6 gene_2 TTGTAAAGAAGACGCAATTCTTT AAATTAAAAGA gi|397022.E6| ACAAGACGTATCTATTGCCTGTG 120 43 lcl|HPV45_E6.1| TATATTGCAAAGCAACATTGGAA Human papillomavirus CGCACAGAGGTATATCAATTTGC 45 (HPV45), TTTTAAAGATTTATGTATA E6 gene_1 GTGTATAGAGACTGTATAGCATA TGCTGCATG gi|397022.E6| GGAAAAAATAACTAATACAGAGT 120 44 lcl|HPV45_E6.1| TGTATAATTTGTTAATAAGGTGC Human papillomavirus CTGCGGTGCCAGAAACCATTGAA 45 (HPV45), CCCAGCAGAAAAACGTA E6 gene_2 GACACCTTAAGGACAAACGAAGA TTTCACAGCAT gi|397038.E6| AATAAGGCTGCAGTGTGTGCAGT 120 45 lcl|HPV52_E6.1| GCAAAAAAGAGCTACAACGAAGA Human papillomavirus GAGGTATACAAGTTTCTATTTAC 52 (HPV52), AGATTTACGAATAGTATA E6 gene_1 TAGAGACAATAATCCATATGGCG TGTGTATTAT gi|397038.E6| GAGGGTAAAAAAACCATTAAGTG 120 46 lcl|HPV52_E6.1| AAATAACTATTAGATGTATAATT Human papillomavirus TGTCAAACGCCATTATGTCCTGA 52 (HPV52), AGAAAAAGAAAGACATGTT E6 gene_2 AATGCAAACAAGCGATTTCATAA TATTATGGG gi|397053.E6| TTTAATTGATCTTAGATTATCAT 120 47 lcl|HPV56_E6.1| GTGTATATTGCAAAAAAGAACTA Human papillomavirus ACACGTGCTGAGGTATATAATTT 56 (HPV56), TGCATGCACTGAATTAAAAT E6 gene_1 TAGTGTATAGGGATGATTTTCCT TATGCAGT gi|397053.E6| ACTAGAAAGTATAACTAAAAAAC 120 48 lcl|HPV56_E6.1| AGTTATGTGATTTATTAATAAGG Human papillomavirus TGCTACAGATGTCAAAGTCCGTT 56 (HPV56), AACTCCGGAGGAAAAGCA E6 gene_2 ATTGCATTGTGACAGAAAAAGAC GATTTCATCT gi|39932599.E6|lcl| GCACCTAACCTGCATATTTTGCA 120 49 HPV62_E6.1| AAACAGACCTGTCCGCCGGTGAA Human papillomavirus CTGCTGTCCTTTGCAATACGGGA 62 (HPV62), GCTACACGTGGTGCGG E6 gene_1 CGAAAGGACTGGCCATTTGGAGT ATGCGCAGCATG gi|39932599.E6| AACAGGCAGTCCGCTTGCACAAA 120 50 lcl|HPV62_E6.1| TATATATTAGATGCCATGCATGC Human papillomavirus TGTATGCCATTAACCTGTCAGGA 62 (HPV62), AAAGGAGTATCAGGTAG E6 gene_2 AGAGGGGAGTGCACTTCCACAAA ATAGCAGGAGT gi|40804509.E6| AGTGGACCTAGACGACCTGCAAC 120 51 lcl|HPV81_E6.1| TGACCTGCATATTTTGCAAAAAG Human papillomavirus GAATTAACAGTAGGTGAATTGCT 81 (HPV81), GTCCTTTGCAATAAGAG E6 gene_1 AGCTAAACTTGGTGTGGCGAAAG AACTGGCCATT gi|40804509.E6| ACCAACAGTAGAAGAGGAGACAG 120 52 lcl|HPV81_E6.1| GGCAACCGCTTGCACAAATATAT Human papillomavirus ATACGATGCCATGCATGCTATAA 81 (HPV81), ACCGTTAACATACCAAG E6 gene_2 AAAAGGAGTATCTTGTGACAGGC CTAATCCACTT gi|50253426.E6| CTTCTGTAAGAAATTTTTAACCT 120 53 lcl|HPV96_E6.1| TTGAGGAGCTATTAGGATTTGAT Human papillomavirus AGCAAGACTTTAAATCTTATTTG 96 (HPV96), GAAGGAAGGTTATGCATAT E6 gene_1 GCGTGTTGTTTCAATTGTGCTAG AACAGTAGC gi|50253426.E6| TTGTTGTATTGTTGTTAGATGCC 120 54 lcl|HPV96_E6.1| AGTTTTGTTTGCGACTGTTAGAT Human papillomavirus TATTTAGAAAAGTTAAATATTTG 96 (HPV96), TGGGTATCAAGAAAACTTTT E6 gene_2 ATTTAGTAAGAGGAGGTTGGAAA GGCATTTG gi|5059324.E6| ACTGATTTGCATTTATTGCACAA 120 55 lcl|HPV83_E6.1| ATGAATTAACAACAGCAGAAGTG Human papillomavirus CTGTCCTTTGCATGGAAGGAGCT 83 (HPV83), GTGTATTAAGTGGGACCA E6 gene_1 CGAACTGCCCTACGGAGCGTGTG CACAGTGTCT gi|5059324.E6| AAAAACACCACTGGCACAGCTGT 120 56 lcl|HPV83_E6.1| ATATACGATGCCATATGTGCCTG Human papillomavirus AAGCCGTTGAGTAGTCAAGAAAA 83 (HPV83), AGAATATTTGGTGCAAA E6 gene_2 CAGGTGATAGACTTCATAATATA GCAGGACAGTG gi|557236.E6| GCATGATATTCGCATCAATTGTG 120 57 lcl|HPV59_E6.1| TGTTTTGCAAAGGGGAACTGCAA Human papillomavirus GAAAGAGAGGTATTTGAATTTGC 59 (HPV59), TTTTAATGACTTATTTATA E6 gene_1 GTGTATAGAGACTGTACACCGTA TGCAGCGTG gi|557236.E6| AGAGGCTGAAACCAAGACACCGT 120 58 lcl|HPV59_E6.1| TACATGAGCTGCTGATACGCTGT Human papillomavirus TATAGATGCCTAAAACCTCTATG 59 (HPV59), TCCAACAGATAAATTAA E6 gene_2 AGCATATAACTGAAAAAAGAAGA TTCCATAATAT gi|60955.E6|lcl| TACGTTGCAAATTAATTGTGTGT 120 59 HPV6_E6.1| TTTGCAAGAATGCACTGACCACA Human papillomavirus GCAGAGATTTATTCATATGCATA 6 (HPV6), TAAACACCTAAAGGTCCTG E6 gene_1 TTTCGAGGCGGCTATCCATATGC AGCCTGCGC gil60955.E6| AGAAGAAACTAAACAAGACATCT 120 60 lcl|HPV6_E6.1| TAGACGTGCTAATTCGGTGCTAC Human papillomavirus CTGTGTCACAAACCGCTGTGTGA 6 (HPV6), AGTAGAAAAGGTAAAAC E6 gene_2 ATATACTAACCAAGGCGCGGTTC ATAAAGCTAAA gi|60975.E6| GCAAGACATAGAAATAACCTGTG 120 61 lcl|HPV18_E6.1| TATATTGCAAGACAGTATTGGAA Human papillomavirus CTTACAGAGGTATTTGAATTTGC 18 (HPV18), ATTTAAAGATTTATTTGTG E6 gene_1 GTGTATAGAGACAGTATACCGCA TGCTGCATG gi|60975.E6| GGAAAAACTAACTAACACTGGGT 120 62 lcl|HPV18_E6.1| TATACAATTTATTAATAAGGTGC Human papillomavirus CTGCGGTGCCAGAAACCGTTGAA 18 (HPV18), TCCAGCAGAAAAACTTA E6 gene_2 GACACCTTAATGAAAAACGACGA TTTCACAACAT gi|6970418.E6| TTTGCAGGTACAGTGTGTATATT 120 63 lcl|HPV69_E6.1 GCAAGAAAACATTAGAATGGGCA Human papillomavirus GATGTATATAACTTTGCAATATG 69 (HPV69), TGATTTAAGAATAGTGTAT E6 gene_1 AGAAATGATAGTGCATATGGTGC ATGTAAAAA gi|6970418.E6| GCGTCCTAAACGAAGTTTGTGTA 120 64 lcl|HPV69_E6.1 ATTTGTTAATAAGGTGTCATAGA Human papillomavirus TGCCAAATACCATTGGGACCGGA 69 (HPV69), AGAAAAACAGAGAATTGT E6 gene_2 GGATGAAAAGCGACGGTTCCATG AAATAGCAGG gi|6970427.E6| TATTCAGGTATTGTGTGTATATT 120 65 lcl|HPV82_E6.1 GTAAAAAGGAGTTGTGTAGAGCA Human papillomavirus GATGTGTATAATGTAGCATTTAC 82 (HPV82), AGAACTTAGGATTGTATAT E6 gene_1 AGGGACAATACGCCATATGCAGC ATGCAAAAA gi|6970427.E6| CATTACTAACAAAAGTTTATATG 120 66 lcl|HPV82_E6.1 AATTATTAATAAGGTGTCATAGA Human papillomavirus TGTCAGAGACCACTTGGGCCTGA 82 (HPV82), AGAAAAGCAAAAGGTGGT E6 gene_2 GGACGACAAAAAAAGGTTTCATG AAATAGCGGG gi|71726685.E6| GCATGACGTTACAATAGACTGTG 120 67 lcl|HPV68_E6.1| TCTATTGCAGAAGGCAACTACAA Human papillomavirus CGGACAGAGGTATATGAATTTGC 68 (HPV68), CTTTAGTGACCTATGTGT E6 gene_1 AGTGTATAGAGACGGGGTACCAT TTGCTGCATG gi|71726685.E6| AGAAACCATAACTAATACAAAGT 120 68 lcl|HPV68_E6.1| TATATAATTTATTGATAAGGTGC Human papillomavirus ATGAGTTGCCTGAAACCATTGTG 68 (HPV68), TCCAGCAGAAAAACTAAG E6 gene_2 GCACCTAACAACAAAACGAAGAT TACATAAAAT gi|9627305.E6| TTTGCAGGTACAGTGTGTATATT 120 69 lcl|HPV26_E6.1| GCAAGGAAACCTTACAATGGGCT Human papillomavirus GATGTATATAATTTTGCAATTTG 26 (HPV26), TGACCTAAGAGTAGTATAT E6 gene_1 AGAGATAGGAGTCCGTATGCTGC ATGCAAAAG gi|9627305.E6| CTTAACTAAAAAAAGTTTATGTA 120 70 lcl|HPV26_E6.1 ATTTGTTAATAAGGTGTCATAGA Human papillomavirus TGTCAAATGCCATTGGGGCCAGA 26 (HPV26), AGAAAAACAAAGAATTGTG E6 gene_2 GATGAAAAGCGACGATTTCACGA AATAGCAGG gi|9627377.E6| ACCATTGCTGGAGCTGCAACTTG 120 71 lcl|HPV53_E6.1| GCTGTGTGTTCTGCAAGAAGGCA Human papillomavirus TTGACAGCGTCAGAGGTATATAA 53 (HPV53), TTTTGCATATACAGATCT E6 gene_1 AAGAGTAGTGTATAGAGACGGGT ATCCGTATGG gi|9627377.E6| TAGCCTGGAAGCACTAACTAAAA 120 72 lcl|HPV53_E6.1 AAAAGTTATCTGATTTATCAATA Human papillomavirus AGGTGCTACAGATGTCAACATCC 53 (HPV53), GTTGACACCAGAGGAAAA E6 gene_2 ACAGTTACACTGTGACTATAAGA AACGGTTTCA gi|9628437.E6| CAGTTATTTGGGGGCAATGTCTG 120 73 lcl|HPV54_E6.1| CTACTGAACCCCACACGGACCAG Human papillomavirus CCGCGTACTCTAGCTGATTTGTG 54 (HPV54), CAAGGTATGCAATATTC E6 gene_1 CTATGCATAGTTTGCAACTTCCT TGTGCCTTTTG gi|9628437.E6| TCCACATGCTGCATGTGCACTGT 120 74 lcl|HPV54_E6.1 GCCTAGAACTGCACGGGCAAATA Human papillomavirus AATTATAGAAGGCATCGCGACCG 54 (HPV54), TGCGTGCCTGTGGGAA E6 gene_2 ACAGTGGAACAAGAGTGTGGAAA GCCATTGGAAGA gi|9628574.E6| GACATGTGTATTTTGCAAAAATG 120 75 lcl|HPV61_E6.1 AATTAACAACAGAAGAATTGCTG Human papillomavirus GCGTTTGCACTAAAGGAGCTAAG 61 (HPV61), CATTGTGTGGAGACATAA E6 gene_1 CTGGCCATTTGGAGTATGCGCAC CATGCTTGGC gi|9628574.E6| ACGGTCATTAGCTGAACTATATA 120 76 lcl|HPV61_E6.1 TACGGTGCCATGCATGCAGCAAA Human papillomavirus CCGTTAAGTATACAGGAAAAGGA 61 (HPV61), GCATCAGGTACAGGCAT E6 gene_2 ACATCCACTTCCACTATATAGCT GGACAGTGGAC 133448_5511683_gi| TTACCAAACGAGCAGGAAACGGA 120 77 333071.E7| GGAGGAGCCTGACAACGAAAGGA lcl|HPV5_E7.1| TCTCTTACAAAGTTATAGCTCCG Humanpapillomavirus TGCGGTTGCAGGAACT 5_1_2 GTGAGGTCAAGCTTCGCATTTTT GTCCACGCCACA 133448_5511684_gi| TAGACAGCTCAGAAGATGAGGTG 120 78 60955.E7| GACGAAGTGGACGGACAAGATTC lcl|HPV6_E7.1| ACAACCTTTAAAACAACATTTCC Humanpapillomavirus AAATAGTGACCTGTTGC 6_1_2 TGTGGATGTGACAGCAACGTTCG ACTGGTTGTGC 133448551 1685_gi| AAGACAGCTCAGAAGATGAGGTG 120 79 333026.E7| GACAAGGTGGACAAACAAGACGC lcl|HPV11_E7.1| ACAACCTTTAACACAACATTACC Humanpapillomavirus AAATACTGACCTGTTG _1_2 CTGTGGATGTGACAGCAACGTCC GACTGGTTGTGG 133448_5511686_gi| TTACCAAACGAGCAGGAAACGGA 120 80 396910.E7| GGAGGAGTCAGATATCGACAGGA lcl|HPV12_E7.1| CTGTATTCAAAATCATTGCACCG Humanpapillomavirus TGTGGCTGCAGCTCCT _1_2 GTGAGGTCAACCTTCGTATTTTT GTCAACGCAACT 133448_5511687_gi| ACAGCTCAGAGGAGGAGGATGAA 120 81 333031.E7| ATAGATGGTCCAGCTGGACAAGC lcl|HPV16_E7.1| AGAACCGGACAGAGCCCATTACA Humanpapillomavirus ATATTGTAACCTTTTG _1_2 TTGCAAGTGTGACTCTACGCTTC GGTTGTGCGTAC 133448_5511688_gi| TCAGAGGAAGAAAACGATGAAAT 120 82 60975.E7| AGATGGAGTTAATCATCAACATT lcl|HPV18_E7.1| TACCAGCCCGACGAGCCGAACCA Humanpapillomavirus CAACGTCACACAATGTT 1_1_2 GTGTATGTGTTGTAAGTGTGAAG CCAGAATTGAG 133448_5511689_gi| ATTTGACAGCTCAGATGAGGATG 120 83 9627305.E7| AAACAGATAATATGCGTGACCAG lcl|HPV26_E7.1 CAGGCCAGACAAGCTGGACAAGA Humanpapillomavirus AGTGTGTTACAGAATT _1_2 GAAGCACAATGTTGTATGTGTAA TAGTATAGTGCA 133448_5511690_gi| ACAGCTCAGATGAGGAGGATGTC 120 84 333048.E7| ATAGACAGTCCAGCTGGACAAGC lcl|HPV31_E7.1| AGAACCGGACACATCCAATTACA Humanpapillomavirus ATATCGTTACCTTTTGT _1_2 TGTCAGTGTAAGTCTACACTTCG TTTGTGTGTAC 133448_5511691_gi| GACAGCTCAGATGAGGATGAAGG 120 85 333049.E7| CTTGGACCGGCCAGATGGACAAG lcl|HPV33_E7.1| CACAACCAGCCACAGCTGATTAC Humanpapillomavirus TACATTGTAACCTGTT _1_2 GTCACACTTGTAACACCACAGTT CGTTTATGTGTC 133448_5511692_gi| AGCTCAGAGGAGGAGGAAGATAC 120 86 396997.E7| TATTGACGGTCCAGCTGGACAAG lcl|HPV35_E7.1| CAAAACCAGACACCTCCAATTAT Humanpapillomavirus AATATTGTAACGTCCTG _1_2 TTGTAAATGTGAGGCGACACTAC GTCTGTGTGTA 133448_5511693_gi| TCCAGAGGATATTGAAGCATCAG 120 87 1020234.E7| TGGTAGAGGAGGAGCCAGCATAC lcl|HPV38_E7.1 ACCCCATACAAAATCATAGTTCT Humanpapillomavirus TTGTGGGGGTTGTGAAG _1_2 TAAGGCTAAAACTATACGTGTGG GCCACCGACGC 133448_5511694_gi| GAGGATGAAATAGATGAACCCGA 120 88 333245.E7| CCATGCAGTTAATCACCAACATC lcl|HPV39_E7.1| AACTACTAGCCAGACGGGATGAA Humanpapillomavirus CCACAGCGTCACACAA _1_2 TACAGTGTTCGTGTTGTAAGTGT AACAACACACTG 133448_5511695_gi| CATGAACAGGACCAACTAGACAG 120 89 397014.E7| CTTACACAGTAGAGAGCGTGAGC lcl|HPV40_E7.1| AACCCACGCAACAGGACCTGCAA Humanpapillomavirus GTAAATTTGCAATCAT _1_2 TTAAAGTAGTAACTCGGTGTGTA TTTTGTCAGTGT 1334485511696_gi| TATGAACAATTGGACAGCTCAGA 120 90 333211.E7| TGAAGATGACCAAGCCAAACAGG lcl|HPV42_E7.1| ACATACAGCGTTACAGAATACTG Humanpapillomavirus TGTGTGTGTACACAGTG _1_2 TTACAAGTCTGTTAAACTCGTTG TGCAGTGTACA 133448_5511697_gi| AGTCAGAGGAGGAAAACGATGAA 120 91 397022.E7| GCAGATGGAGTTAGTCATGCACA lcl|HPV45_E7.1| ACTACCAGCCCGACGAGCCGAAC Humanpapillomavirus CACAGCGTCACAAAA _1_2 TTTTGTGTGTATGTTGTAAGTGT GACGGCAGAATTG 133448_5511698_gi| TCAGAGGAGGAGGATGAAGTAGA 120 92 333087.E7| TAATATGCGTGACCAGCTACCAG lcl|HPV51_E7.1| AAAGACGGGCTGGACAGGCTACG Humanpapillomavirus TGTTACAGAATTGAAG _1_2 CTCCGTGTTGCAGGTGTTCAAGT GTAGTACAACTG 133448_5511699_gi| AGCTCAGATGAGGAGGATACAGA 120 93 397038.E7| TGGTGTGGACCGGCCAGATGGAC lcl|HPV52_E7.1| AAGCAGAACAAGCCACAAGCAAT Humanpapillomavirus TACTACATTGTGACAT _1_2 ATTGTCACAGTTGTGATAGCACA CTACGGCTATGC 133448_5511700_gi| GATGAGGATGAGGATGAAGTAGA 120 94 9627377.E7| CCATCTGCAGGAGCAGCCACAGC lcl|HPV53_E7.1 AAGCTAGACGGGACGAACAACAT Humanpapillomavirus CCTTGTTACCTAATTG _1_2 AAACACAGTGTTGTAGGTGTGAG TCGTTGGTGCAG 133448_5511701_gi| GAAGACTCTGATGCAGAAGATGA 120 95 9628437.E7| GACAGCAGTAACACAACCTGACA lcl|HPV54_E7.1 AACAAGCATTTAAGGTGTTAAGC Humanpapillomavirus CAGTGTGGAGGTGTGT _1_2 GTTGTAAGACAGTACGGCTATGT GTGTATAGCACG 133448_5511702_gb| GACAGCTCAGAGGATGAGGTGGA 120 96 U31791.1| TGAACTAGCCACGCAGGCCACGC HPU31791:530-823 AAGACGTTACACAGCCTTACCAA Humanpapillomavirus ATAGTAACCACCTGT _1_2 GGTACATGTAACCGGAACGTTCG GCTGGTTGTGCAG 133448_5511703_gi| GATGAGGATGAGGATGAAGTAGA 120 97 397053.E7| CCATTTGCAGGAGCGGCCACAGC lcl|HPV56_E7.1| AAGCTAGACAAGCTAAACAACAT Humanpapillomavirus ACGTGTTACCTAATAC _1_2 ACGTACCTTGTTGTGAGTGTAAG TTTGTGGTGCAG 133448_5511704_gi| ACAGCTCAGACGAGGATGAAATA 120 98 222386.E7| GGCTTGGACGGGCCAGATGGACA lcl|HPV58_E7.1| AGCACAACCGGCCACAGCTAATT Humanpapillomavirus ACTACATTGTAACTTG _1_2 TTGTTACACTTGTGGCACCACGG TTCGTTTGTGTA 133448_5511705_gi| GACTCCGAGAATGAAAAAGATGA 120 99 557236.E7| ACCAGATGGAGTTAATCATCCTT lcl|HPV59_E7.1| TGCTACTAGCTAGACGAGCTGAA Humanpapillomavirus CCACAGCGTCACAACAT _1_2 TGTGTGTGTGTGTTGTAAGTGTA ATAATCAACTT 133448_5511706_gi| TTAGACAGCTCAGAGTCAGAGGA 120 100 9628574.E7| GGAGGATAGTGTGCGTGAGCAAC lcl|HPV61_E7.1 TTGTTGAACAAGCACAGCAGGCC Humanpapillomavirus TACAGGGTGGTTACTA _1_2 CCTGTGGCATTTGTAAGTGTCCA GTTAGGCTGGTG 133448_5511707_gi| AGACAGCTCAGAGGAAGAGGTGG 120 101 39932599.E7| ATGATAGGGACAGTGCTGAGCAA lcl|HPV62_E7.1| CCTGTAGAACGGGCACAGCAGGC Humanpapillomaviru CCATAGGGTGGTTAC _1_2 TACGTGTGGTATTTGCAACTGTT TAGTTAGGTTGGT 133448_5511708_gi| GATGAGGATGAGGATGAAATAGA 120 102 1020290.E7| CCATTTGCTGGAGCGGCCACAGC lcl|HPV66_E7.1 AAGCTAGACAAGCTGAACAACAT Humanpapillomavirus AAGTGTTACCTAATTCA _1_2 CGTACCTTGTTGTAAGTGTGAGT TGGTGGTGCAG 133448_5511709_gi| AGCTCAGATGAGGAGGATGAAGT 120 103 3228267.E7| AGGCATGGACCGGCCAGATGGAC lcl|HPV67_E7.1| AAGCAAAACCAGATACAACCAAT Humanpapillomavirus TACCATATTGTTACTG _1_2 TGTGTAACATCTGTGAGTGCACT TTGCGTTTGTGC 133448_5511710_gi| ACGATGAAATAGATGAACCCGAC 120 104 71726685.E7| CATGCAGTTAATCACCACCAACA lcl|HPV68_E7.1| TCTACTACTAGCCAGACGGGACG Humanpapillomaviru AACAACAGCGTCACAG _1_2 AATTCAGTGTCTGTGTTGTAAGT GTAACAAGGCAC 133448_5511711_gi| ATTTGACAGCTCAGAGGAGGATG 120 105 6970418.E7| AAACAGATAATGTGCGTAACCAG lcl|HPV69_E7.1| CAAGCCAGACAAGCTGAACAAGA Humanpapillomavirus AGCGTGTTATAGAATA _1_2 GAAGCGGAATGTTGTGTATGTAA TAGTATAGTGCA 133448_5511712_gi| GACAATGAAACAGATGAACCCGA 120 106 1173493.E7| CCATGTAGTTAATCACCAACAAC lcl|HPV70_E7.1| AACTACTAGCCAGACGGGAAGAA Humanpapillomavirus CCACAGCGTCACAAAA _1_2 TACAGTGTATGTGTTGTAAGTGT AATACTACACTG 133448_5511713_gi| TTGCCAGCTCAGACGAGGAAGAT 120 107 12084981.E7| AATAGGGTGGACGGTGAGCAACC lcl|HPV71_E7.1| CACAGAACCAGCACAGCAGGCAT Humanpapillomaviru ATAGGGTGGTTTCAT _1_2 ACTGTGGTAGGTGCTGTCGTGCA GTTAGGCTTGTGG 133448_5511714_gi| CTCAGAGTCAGAGTCAGAGGATG 120 108 1491683.E7| AGAGGGACGGTGTTGGTGTGCAG lcl|HPV72_E7.1 GAGCAACTTGTAGAACAAGCACA Humanpapillomavirus GCAGGCCTACGGGGT _1_2 GGTTACTACCTGTGGCAGGTGCT ACCGTCCAGTTAG 133448_5511715_gi| GACAACTCAGAGGATGAGGATGA 120 109 1491692.E7| AACAGACAGCCATCTAGACAGAC lcI|HPV73_E7.1| AAGCTGAACGAGAGTGTTACAGA Humanpapillomavirus ATAGTTACTGACTGCA _1_2 CGAAGTGTCAGTGCACAGTATGC CTTGCCATTGAA 133448_5511716_gi| ACAGCTCAGAGGAAGAGGTGGAT 120 110 40804509.E7| GTGGATGATAGGGACAGTGGTGA lcl|HPV81_E7.1| GCAACTAGTAGAACAAGCACAGC Humanpapillomaviru AGGCCTATAGGGTGG _1_2 TTACTACGTGTGGTATTTGTAGG TGTTTAGTTAGGC 133448_5511717_gi| CTCAGACGAGGAGGATGAAGTAG 120 111 6970427.E7| ATAATATGCGTGACCAGCCAGCC lcl|HPV82_E7.1 AGACAAGCTGGACAGGATACGTG Humanpapillomavirus TTACAGAATTAAAGTG _1_2 CACTGTTGCAGGTGTTCGAGTGT TGTACAGCTCGC 133448_5511718_gi| GACAGCTCAGAGGAGGAGGATGA 120 112 5059324.E7| TAGGGACTGTGGCGTGCGTGACC lcl|HPV83_E7.1 AACTGGCAGAACAAGCAAAGCAG Humanpapillomavirus GCCTATAGGGTGTTA _1_2 ACAGTGTGTGGTATGTGTGGCCA GGCACTTAGACTA 133448_5511719_gi| AGACAGCTCAGAGGAGGAGGATA 120 113 12958167.E7| ATGGGGATTGCTTGCGTGACCAA lcl|HPV84_E7.1| CCTGCAAAACCAGCACAGCTGGC Humanpapillomaviru CTATAGGGTGGTAAC _1_2 AGAGTGTGGGTTGTGTAGCCGTC CAGTTAGGCTGGC 133448_5511720_gi| ACAGAAGAGCAGTCAGAAAACCT 120 114 50253426.E7| GTCAGAATCTACAGTAGCAGAGG lcl|HPV96_E7.1| TGGAGCCTCAGAGAACTCTGTAC Humanpapillomaviru AAGATTGTAGTACCGT _1_2 GTGGAGGCTGTGATTCCCGGCTG AAAATCTACGTT

HPV33_ SingleStrand_ SEQ SequenceName Sequence Length ID#: 129911_5270177_ GTAAACTATAATGCCAAGTTTTAAA 120 115 HPV33REF_1_1 AAAGTAGGGTGTAACCGAAAGCGGT TCAACCGAAAACGGTGCATATATAA AGCAAAC ATTTTGCAGTAAGGTACTGCACGAC TATGTTTCAAGAC 129911_5270177_ ACACTGAGGAAAAACCACGAACATT 120 116 HPV33REF_1_2 GCATGATTTGTGCCAAGCATTGGAG ACAACTATACACAACATTGAACTAC AGTGCGT GGAATGCAAAAAACCTTTGCAACGA TCTGAGGTATATG 129911_5270177_ TGATTTTGCATTTGCAGATTTAACA 120 117 HPV33REF_1_3 GTTGTATATAGAGAGGGAAATCCAT TTGGAATATGTAAACTGTGTTTGCG GTTCTTAT CTAAAATTAGTGAATATAGACATTA TAATTATTCTGT 129911_5270177_ GTATATGGAAATACATTAGAACAAA 120 118 HPV33REF_1_4 CAGTTAAAAAACCTTTAAATGAAAT ATTAATTAGGTGTATTATATGTCAA AGACCTTTG TGTCCTCAAGAAAAAAAACGACATG TGGATTTAAAC 129911_5270177_ ACAAACGATTTCATAATATTTCGGG 120 119 HPV33REF_1_5 TCGTTGGGCAGGGCGCTGTGCGGCG TGTTGGAGGTCCCGACGTAGAGAAA CTGCA CTGTGACGTGTAAAAACGCCATGAG AGGACACAAGCCAAC 1299115270177_ ACGTTAAAGGAATATGTTTTAGATT 120 120 HPV33REF_1_6 TATATCCTGAACCAACTGACCTATA CTGCTATGAGCAATTAAGTGACAGC TCAGATGA GGATGAAGGCTTGGACCGGCCAGAT GGACAAGCACAA 129911_5270177_ AACCAGCCACAGCTGATTACTACAT 120 121 HPV33REF_1_7 TGTAACCTGTTGTCACACTTGTAAC ACCACAGTTCGTTTATGTGTCAACA GTACAGC AAGTGACCTACGAACCATACAGCAA CTACTTATGGGCA 129911_5270177_ CACAGTGAATATTGTGTGCCCTACC 120 122 HPV33REF_1_8 TGTGCACAACAATAAACATCATCTA CAATGGCCGATCCTGAAGGTACAAA TGGGGC TGGGATGGGGTGTACTGGTTGGTTT GAGGTAGAAGCAGT 129911_5270177_ GTCATAGAGAGAAGAACAGGAGATA 120 123 HPV33REF_1_9 ATATTTCAGAAGATGAGGATGAAAC AGCAGATGACAGTGGCACGGATTTA CTAGAG TTTATAGATGATTCTATGGAAAATA GTATACAGGCAGAC 129911_5270177_ ACACAGAGGCAGCCCGGGCATTGTT 120 124 HPV33REF_1_10 TAATATACAGGAAGGGGAGGATGAT TTAAATGCTGTGTGTGCACTAAAAC GAAAGT TTGCCGCATGTTCACAAAGTGCTGC GGAGGACGTTGTTG 129911_5270177_ TGATCGTGCTGCAAACCCGTGTAGA 120 125 HPV33REF_1_11 ACGTCTATTAATAAAAATAAAGAAT GCACATACAGAAAACGAAAAATAGA TGAGCTA GAAGACAGCGGATATGGCAATACTG AAGTGGAAACTCA 129911_5270177_ CAGCAGATGGTACAACAGGTAGAAA 120 126 HPV33REF_1_12 GTCAAAATGGCGACACAAACTTAAA TGACTTAGAATCTAGTGGGGTGGGG GATGAT TCAGAAGTAAGCTGTGAGACAAATG TAGATAGCTGTGAA 129911_5270177_ AAAATGTTACGTTGCAGGAAATTAG 120 127 HPV33REF_1_13 TAATGTTCTACATAGTAGTAATACA AAAGCAAATATATTATATAAATTTA AAGAGGCCT ATGGAATAAGTTTTATGGAATTAGT AAGACCATTTA 129911_5270177_ TAAAAGTGATAAAACAAGCTGTACA 120 128 HPV33REF_1_14 GATTGGTGTATAACAGGATATGGAA TTAGTCCATCAGTAGCAGAAAGTTT AAAAGTAT TAATTAAACAGCATAGTTTGTATAC TCATTTACAATG 129911_5270177_ TGTTTAACTTGCGATAGAGGAATAA 120 129 HPV33REF_1_15 TAATATTATTGTTAATTAGATTTAG GTGTAGCAAAAACAGGTTAACAGTA GCAAAACT AATGAGTAATTTATTATCAATACCT GAAACATGTATG 129911_5270177_ TGGTTATAGAGCCACCAAAATTACG 120 130 HPV33REF_1_16 GAGCCAAACATGTGCATTGTATTGG TTTAGAACAGCAATGTCAAACATTA GTGATGT ACAAGGTACAACACCTGAATGGATA GATAGACTAACTG 129911_5270177_ TGTTTTACAACATAGCTTTAATGAT 120 131 HPV33REF_1_17 AATATATTTGATTTAAGTGAAATGG TACAGTGGGCATATGATAACGAGTT AACGGACG ATAGTGACATTGCATATTATTATGC ACAACTTGCAGA 129911_5270177_ GATTCAAATAGTAATGUTGUTGCAT 120 132 HPV33REF_1_18 TTTTAAAAAGTAACTCACAAGCAAA AATAGTAAAGGACTGTGGAATAATG TGTAGACA TTATAAAAAAGCAGAAAAACGTAAA ATGTCAATAGGA 129911_5270177_ GACAATGGATACAAAGTAGATGTGA 120 133 HPV33REF_1_19 AAAAACAAATGATGGAGGAAATTGG AGACCAATAGTACAGTTGTTAAGAT ATCAAAA GATTGAATTTACAGCATTTTTAGGT GCATTTAAAAAGT 129911_5270177_ GTTTTTAAAAGGTATACCAAAAAAA 120 134 HPV33REF_1_20 AGCTGTATGCTAATTTGTGGACCAG CAAATACAGGAAAGTcATATTTTGG AATGAGTT TAATACAGTTTTTAAAAGGGTGTGT TATATCATGTGT 129911_5270177_ GTAAATTCTAAAAGTCACTTTTGGT 120 135 HPV33REF_1_21 TGCAGCCATTATCAGATGCAAAAAT AGGAATGATAGATGATGTAACGCCA ATAAGTTG GACATATATAGATGATTACATGAGA AATGCGTTAGAT 129911_5270177_ ATGGAAATGAAATTTCAATAGATGT 120 136 HPV33REF_1_22 GAAACATAGGGCATTAGTGCAATTA AAATGTCCACCACTGCTTCTTACCT CAAATACA AATGCAGGCACAGACTCTAGATGGC CATATTTACATA 129911_5270177_ TAGTAGATTAACAGTATTTGAATTT 120 137 HPV33REF_1_23 AAAAATCCATTCCCATTTGATGAAA ATGGTAACCCAGTGTATGCAATAAA TGATGAAAA TTGGAAATCCTTTTTCTCAAGGACG TGGTGCAAATT 129911_5270177_ TTAGATTTAATAGAGGAAGAGGACA 120 138 HPV33REF_1_24 AGGAAAACCATGGAGGAAATATCAG CACGTTTAAATGCAGTGCAGGAGAA AATACTA GATCTTTACGAAGCTGATAAAACTG ATTTACCATCACA 129911_5270177_ CAAATTGAACATTGGAAACTGATAC 120 139 HPV33REF_1_25 GCATGGAGTGTGCTTTATTGTATAC AGCCAAACAAATGGGATTTTCACAT TTATGCCA CCAGGTGGTGCCTTCTTTGTTAGCA TCAAAGACCAAA 129911_5270177_ AAGCATTTCAAGTAATTGAACTACA 120 140 HPV33REF_1_26 AATGGCATTAGAGACATTAAGTAAA TCACAGTATAGTACAAGCCAATGGA CATTGCAA CAAACAAGCTTAGAGGTGTGGCTTT GTGAACCACCAA 129911_5270177_ AAAATGTTTTAAAAAACAAGGAGAA 120 141 HPV33REF_1_27 ACAGTAACTGTGCAATATGACAATG ACAAAAAAAATACAATGGATTATAC AAACTGGG GTGAAATATATATTATAGAGGAAGA TACATGTACTAT 129911_5270177_ ATGGTTACAGGGAAAGTAGATTATA 120 142 HPV33REF_1_28 TAGGTATGTATTATATACATAACTG TGAAAAGGTATATTTTAAATATTTT AAAGAGGAT GCTGCAAAGTATTCTAAAACACAAA TGTGGGAAGTA 129911_5270177_ TACATGTGGGTGGTCAGGTAATTGT 120 143 HPV33REF_1_29 TTGTCCTACGTCTATATCTAGCAAC CAAATATCCACTACTGAAACTGCTG ACATACA GACAGACAACGATAACCGACCACCA CAAGCAGCGGCCA 129911_5270177_ CAAACGACGACGACCTGCAGACACC 120 144 HPV33REF_1_30 ACAGACACCGCCCAGCCCCTTACAA AGCTGTTCTGTGCAGACCCCGCCTT GGACA ATAGAACAGCACGTACTGCAACTAA CTGCACAAACAAGCA 129911_5270177_ CAGCGGACTGTGTGTAGTTCTAACG 120 145 HPV33REF_1_31 TTGCACCTATAGTGCATTTAAAAGG TGAATCAAATAGTTTAAAATGTTTA AGATACAG ATTAAAACCTTATAAAGAGTTGTAT AGTTCTATGTCA 129911_5270177_ CATCCACCTGGCATTGGACCAGTGA 120 146 HPV33REF_1_32 CAACAAAAATAGTAAAAATGGAATT GTAACTGTAACATTTGTAACTGAAC AGCAACA ACAAATGTTTTTAGGTACCGTAAAA ATACCACCTACTG 129911_5270177_ TGTGCAAATAAGTACTGGATTTATG 113 147 HPV33REF_1_33 ACATTATAAGTGTACATCACAAGCC AATATGTGCTGCTAATTGTATATAA CCATGATA TTTGTTTTTGtattatgttttatat tgttt 129911_5270178_ tatgcttatccttattattaCGTCC 120 148 HPV33REF_2_1 TTTAATACTTTCCATTTCTACCTAT GCTTGGTTGCTGGTGTTGGTATTGC TGCTTTGGGTGTTTGT GGGATCTCCTTTAAAAATTTTTTTT TGCT 129911_5270178_ CTATTTGTTGTTTTTATATTTACCA 120 149 HPV33REF_2_2 ATGATGTGTATTAATTTTCATGCAC AGCATATGACACAACAAGAGTAATG TATATACAT GTATATATTGTTTGTATATATGTGC ACATGGTGGTG 129911_5270178_ TGTTTTAACATTGTTGTTGTTATTT 120 150 HPV33REF_2_3 TAGTTTTTTTTTTTTTGTATTACTA ATAAATACCTTTATATTTTAGCAGT GTATTATTATGA GACACAAACGATCTACAAGGCGCAA GCGTGCAT 129911_5270178_ ATCTGCAACACAACTATACCAAACA 120 151 HPV33REF_2_4 TGCAAGGCCACAGGCACCTGCCCAC CCGATGTTATTCCTAAAGTGGAAGG AAGTAC CATAGCAGATCAAATTCTTAAATAT GGCAGTTTAGGGGT 129911_5270178_ GTTTTTTTTGGTGGTTTAGGTATTG 120 152 HPV33REF_2_5 GCACAGGCTCTGGTTCAGGTGGAAG GACTGGCTATGTACCTATTGGTACT GACCCAC CTACAGCTGCAATCCCCTTGCAGCC TATACGTCCTCCG 129911_5270178_ CGGTTACTGTAGACACTGTTGGACC 120 153 HPV33REF_2_6 TTTAGACTCGTCTATAGTGTCATTA ATAGAAGAAACAAGTTTTATAGAGG CAGGTGC ACCAGCCCCATCTATTCCTACACCA TCAGGTTTTGATG 129911_5270178_ TGTTACTACATCTGCAGATACTACA 120 154 HPV33REF_2_7 CCTGCAATTATTAATGTTTCATCTG TTGGGGAGTCATCTATTCAAACTAT TTCTACACA TTTAAATCCCACATTTACTGAACCA TCTGTACTACA 129911_5270178_ CACCCTCCAGCGCCTGCAGAAGCCT 120 155 HPV33REF_2_8 CTGGACATTTTATATTTTCTTCCCC TACTGTTAGCACACAAAGTTATGAA AACATAC CAATGGATACCTTTGTTGTTTCCAC AGACAGTAGTAAT 129911_5270178_ ATGTAACATCAAGCACGCCCATTCC 120 156 HPV33REF_2_9 AGGGTCTCGCCCTGTGGCACGCCTT GGTTTATATAGTCGCAATACCCAAC AGGTTA AGGTTGTTGACCCTGCTTTTTTAAC ATCGCCTCATAAAC 129911_5270178_ ACTTATAACATATGATAATCCTGCA 120 157 HPV33REF_2_10 TTTGAAAGCTTTGACCCTGAAGACA CATTACAATTTCAACATAGTGATAT ATCACCTG CTCCTGATCCTGACTTTCTAGATAT TATTGCATTACA 129911_5270178_ CATAGGCCTGCTATTACATCTCGTA 120 158 HPV33REF_2_11 GACATACTGTGCGTTTTAGTAGAGT AGGTCAAAAAGCCACACTTAAAACT CGCAGTG GTAAACAAATTGGAGCTAGAATACA TTATTATCAGGAT 129911_5270178_ ATTTAAGTCCTATTGTGCCTTTAGA 120 159 HPV33REF_2_12 CCACACCGTGCCAAATGAACAATAT GAATTACAGCCTTTACATGATACTT CTACATCG TCTTATAGTATTAATGATGGTTTGT ATGATGTTTATG 129911_5270178_ TGCTGACGATGTGGATAATGTACAC 120 160 HPV33REF_2_13 ACCCCAATGCAACACTCATACAGTA CGTTTGCAACAACACGTACCAGCAA TGTGTCT ATACCTTTAAATACAGGATTTGATA CTCCTGTTATGTC 129911_5270178_ TCTGGCCCTGATATACCTTCCCCTT 120 161 HPV33REF_2_14 TATTTCCCACATCTAGCCCATTTGT TCCTATTTCGCCTTTTTTTCCTTTT GACACCATT GTTGTAGACGGTGCTGACTTTGTTT TACATCCTAGT 129911_5270178_ GTTATTTTATTTTACGTCGCAGGCG 120 162 HPV33REF_2_15 TAAACGTTTTCCATATTTTTTTACA GATGTCCGTGTGGCGGCCTAGTGAG GCCACAG TGTACCTGCCTCCTGTACCTGTATC TAAAGTTGTCAGC 129911_5270178_ GCACTGATGAATATGTGTCTCGCAC 120 163 HPV33REF_2_16 AAGCATTTATTATTATGCTGGTAGT TCCAGACTTCTTGCTGTTGGCCATC CATATTTT TCTATTAAAAATCCTACTAACGCTA AAAAATTATTGG 129911_5270178_ GGTACCCAAAGTATCAGGCTTGCAA 120 164 HPV33REF_2_17 TATAGGGTTTTTAGGGTCCGTTTAC CAGATCCTAATAAATTTGGATTTCC TGACACC TCCTTTTATAACCCTGATACACAAC GATTAGTATGGGC 129911_5270178_ GCATGTGTAGGCCTTGAAATAGGTA 120 165 HPV33REF_2_18 GAGGGCAGCCATTAGGCGTTGGCAT AAGTGGTCATCCTTTATTAAACAAA TTTGATG ACACTGAAACCGGTAACAAGTATCC TGGACAACCGGGT 129911_5270178_ GTGCTGATAATAGGGAATGTTTATC 120 166 HPV33REF_2_19 CATGGATTATAAACAAACACAGTTA TGTTTACTTGGATGTAAGCCTCCAA CAGGGGA ACATTGGGGTAAAGGTGTTGCTTGT ACTAATGCAGCAC 129911_5270178_ ACCTGCCAATGATTGTCCACCTTTA 120 167 HPV33REF_2_20 GAACTTATAAATACTATTATTGAGG ATGGTGATATGGTGGACACAGGATT TGGTTGC ATGGATTTTAAAACATTGCAGGCTA ATAAAAGTGATGT 129911_5270178_ GTTCCTATTGATATTTGTGGCAGTA 120 168 HPV33REF_2_21 CATGCAAATATCCAGATTATTTAAA AATGACTAGTGAGCCTTATGGTGAT AGTTTATTT TTCTTTCTTCGACGTGAACAAATGT TTGTAAGACAC 129911_5270178_ ACTTTTTTAATAGGGCTGGTACATT 120 169 HPV33REF_2_22 AGGAGAGGCTGTTCCCGATGACCTG TACATTAAAGGTTCAGGAACTACTG CCTCTAT TCAAAGCAGTGCTTTTTTTCCCACT CCTAGTGGATCAA 129911_5270178_ AATGGTTACTTCCGAATCTCAGTTA 120 170 HPV33REF_2_23 TTTAATAAGCCATATTGGCTACAAC GTGCACAAGGTCATAATAATGGTAT TTGTTGGG GCAATCAGGTATTTGTTACTGTGGT AGATACCACTCG 129911_5270178_ CGCAGTACTAATATGACTTTATGCA 120 171 HPV33REF_2_24 CACAAGTAACTAGTGACAGTACATA TAAAAATGAAAATTTTAAAGAATAT ATAAGACAT GTTGAAGAATATGATCTACAGTTTG TTTTTCAACTA 129911_5270178_ TATGCAAAGTTACCTTAACTGCAGA 120 172 HPV33REF_2_25 AGTTATGACATATATTCATGCTATG AATCCAGATATTTTAGAAGATTGGC AATTTGGTT TAACACCTCCTCCATCTGCTAGTTT ACAGGATACCT 129911_5270178_ CTATAGGTTTGTTACCTCTCAGGCT 120 173 HPV33REF_2_26 ATTACGTGTCAAAAAACAGTACCTC CAAAGGAAAAGGAAGACCCCTTAGG TAAATAT ACATTTTGGGAAGTGGATTTAAAGG AAAAATTTTCAGC 129911_5270178_ GCAGATTTAGATCAGTTTCCTTTGG 120 174 HPV33REF_2_27 GACGCAAGTTTTTATTACAGGCAGG TCTTAAAGCAAAACCTAAACTTAAA CGTGCAG CCCCCACATCCACCCGCACATCGTC TGCAAAACGCAAA 129911_5270178_ AAAAGGTTAAAAAATAACACTTTGT 120 175 HPV33REF_2_28 GTAATTGTGTTATGTTGTTGTTTTG TTCTGTCTATGTACTTTGTGTTGTT GTGTTGTGTT GTTGTTTGTTTTTTGTGTATGTGTT ACAATGTATG 129911_5270178_ TGTTATGTTGTATGTTACTGTGTTT 120 176 HPV33REF_2_29 GTTTTATGTGTACTTGTTTGTGTGC ATGTTCTATGTACTTGTCAGTTTCC TGTTTGTGTA TATGTTAATAAAACATTGTGTGTAT TTGTTAAACT 129911_5270178_ CTATTTGTATGTATGTTATGTATAT 120 177 HPV33REF_2_30 GGGTGTACCTATATGAGTAAGGAGT TGTATTGCTTGCCCTACCCTGCATT GCAATGTA CCTACCTTTATTTCCCTATATTTGT AGTACCTACATG 129911_5270178_ TGTTTAGTATTGCTTTACCTTTTGA 120 178 HPV33REF_2_31 CATACTAGTGTCCATATTGTACAAT TTCCTCCATTTTGTATGCCTAACCG TTTTCGGTT ACTTGGCATACATACCCTATGACAT TGGCAGAACAG 129911_5270178_ AGTTAATCCTTTTCTTTCCTGCACT 120 179 HPV33REF_2_32 GTGTTTGTCTGTACTTGCTGCATTG GCATACATACCCTATGACATTGGCA GAACAGTT AATCCTTTTCTTTCCTGCACTGTGT TTGTCTGTACTT 129911_5270178_ TTGCTGCATTGACTCATATATACAT 120 180 HPV33REF_2_33 GCAGTGCAATTGCAAAATACTTAAT TGTACTAATAGTTTACACATGCTTT TAGGCACAT ATTTTTACTTTACTTTCAAACCTTA AGTGCAGTTTT 129911_5270178_ TTGGCTTACACAATTGCTTTGTATG 120 181 HPV33REF_2_34 CCAAACTATGCCTTGTAAAAGTGAG TCACTACCTGTTTATTACCAGGTGT GGACTAAC CGTTTTAGGTCATATTGGTCATTTA TAATCTTTTATA

HPV45_SingleStrand_ SEQ SequenceName Sequence Length ID#: 129911_5270179_ AATACTTTTAACAATTATACTACAT 120 182 HPV45REF_1_1 AAAAAAGGGTGTAACCGAAAACGGT TGCAACCAAAAACGGTGCATATAAA AGCTTTGTGGAAAAGTGCA TTACAGGATGGCGCGCTTTGACGAT C 129911_5270179_ CAAAGCAACGACCCTACAAGCTACC 120 183 HPV45REF12 AGATTTGTGCACAGAATTGAATACA TCACTACAAGACGTATCTATTGCCT GTGTATATTGCAAAGCAAC ATTGGAACGCACAGAGGTATATCAA T 129911_5270179_ TTGCTTTTAAAGATTTATGTATAGT 120 184 HPV45REF_1_3 GTATAGAGACTGTATAGCATATGCT GCATGCCATAAATGTATAGACTTTT ATTCCAGAATTAGAGAATTAA GATATTATTCAAACTCTGTATATG 129911_5270179_ GAGAGACACTGGAAAAAATAACTAA 120 185 HPV45REF_1_4 TACAGAGTTGTATAATTTGTTAATA AGGTGCCTGCGGTGCCAGAAACCAT TGAACCCAGCAGAAAAAC GTAGACACCTTAAGGACAAACGAAG AT 129911_5270179_ TTCACAGCATAGCTGGACAGTACCG 120 186 HPV45REF_1_5 AGGGCAGTGTAATACATGTTGTGAC CAGGCACGGCAAGAAAGACTTCGCA GACGTAGGGAAACACAA GTATAGCAATAAGTATGCATGGACC CCG 129911_5270179_ GGAAACACTGCAAGAAATTGTATTG 120 187 HPV45REF_1_6 CATTTGGAACCTCAGAATGAATTAG ATCCTGTTGACCTGTTGTGTTACGA GCAATTAAGCGAGTCAGAG GAGGAAAACGATGAAGCAGATGGAG T 129911_5270179_ TAGTCATGCACAACTACCAGCCCGA 120 188 HPV45REF_1_7 CGAGCCGAACCACAGCGTCACAAAA TTTTGTGTGTATGTTGTAAGTGTGA CGGCAGAATTGAGCTTAC AGTAGAGAGCTCGGCAGAGGACCTT AG 129911_5270179_ AACACTACAGCAGCTGTTTTTGAGC 120 189 HPV45REF_1_8 ACCTTGTCCTTTGTGTGTCCGTGGT GTGCAACTAACCAATAATCTACAAT GGCGGATCCAGAAGGTAC CGACGGGGAGGGAACGGGGTGTAAT GG 129911_5270179_ CTGGTTCTTTGTAGAAACAATTGTA 120 190 HPV45REF_1_9 GAGAAAAAAACAGGGGATGTAATAT CAGATGATGAGGATGAAACTGCAAC AGATACAGGGTCGGATAT GGTAGATTTTATTGACACACAATTA TC 129911_5270179_ CATTTGTGAACAGGCAGAGCAAGAG 120 191 HPV45REF_1_10 ACAGCACAGGCATTGTTCCATGCGC AGGAAGTTCAGAATGATGCACAGGT GTTGCATCTTTTAAAACG AAAGTTTGCAGGAGGCAGCAAGGAA AA 129911_5270179_ CAGTCCATTAGGGGAGCAGCTAAGT 120 192 HPV45REF_1_11 GTGGATACGGATCTAAGTCCACGGT TACAAGAAATTTCATTAAATAGTGG GCACAAAAAAGCAAAACG ACGGTTGTTTACAATATCAGATAGT GG 129911_5270179_ CTATGGCTGTTCTGAAGTGGAAGCT 120 193 HPV45REF_1_12 GCAGAGACTCAGGTAACTGTAAACA CTAATGCGGAAAATGGCGGCAGTGT ACATAGTACACAAAGTA GTGGTGGGGATAGTAGTGACAATGC AGA 129911_5270179_ AAATGTAGATCCGCATTGCAGTATT 120 194 HPV45REF_1_13 ACAGAACTAAAGGAGCTATTACAAG CAAGTAACAAAAAGGCTGCAATGCT GGCAGTATTTAAAGACATA TATGGGCTGTCATTTACGGATTTGG T 129911_5270179_ TAGAAATTTTAAAAGTGATAAAACA 120 195 HPV45REF_1_14 ACATGTACAGATTGGGTAATGGCTA TATTTGGAGTTAATCCAACGGTAGC AGAAGGCTTTAAAACATTAA TTAAACCAGCAACGTTATACGCCCA 129911_5270179_ TATCCAATGTTTAGATTGTAAATGG 120 196 HPV45REF_1_15 GGAGTATTAATATTAGCTTTATTAA GATATAAATGTGGCAAAAATAGACT AACTGTTGCAAAAGGCTTAA GCACATTGTTGCACGTACCTGAAAC 129911_5270179_ ATGTATGTTAATTGAACCACCAAAA 120 197 HPV45REF_1_16 TTGCGAAGTAGTGTTGCAGCATTAT ACTGGTATAGAACAGGTATATCCAA TATTAGTGAAGTAAGTGGA GACACACCTGAGTGGATACAAAGAC T 129911_5270179_ GACAATTATTCAACATGGTATTGAC 120 198 HPV45REF_1_17 GATAGTAATTTTGATTTGTCAGACA TGGTGCAATGGGCATTTGATAATGA CCTTACAGATGAAAGTGATA TGGCATTTCAATATGCCCAATTAGC 129911_5270179_ AGACTGCAACAGTAATGCAGCTGCA 120 199 HPV45REF_1_18 TTTTTAAAAAGTAACTGCCAAGCCA AATATTTAAAAGATTGTGCTGTAAT GTGTAGACATTATAAAAGAG CACAAAAACGCCAAATGAATATGTC 129911_5270179_ TCAATGGATTAAATATAGATGTTCC 120 200 HPV45REF_1_19 AAAATAGATGAAGGTGGGGATTGGA GACCCATAGTACAATTCCTAAGATA TCAGGGAGTAGAATTTATT AGCTTTTTAAGGGCACTAAAGGAAT T 129911_5270179_ TCTTAAAGGAACACCAAAAAAAAAT 120 201 HPV45REF_1_20 TGTATACTGTTATATGGACCTGCAA ATACAGGAAAATCGTATTTTGGAAT GAGTTTTATACATTTCCTACA AGGTGCAATAATATCATTTGTAAA 129911_5270179_ TTCAAACAGCCATTTTTGGTTAGAA 120 202 HPV45REF_1_21 CCGTTAGCAGATACTAAGGTAGCCA TGTTGGATGATGCCACACACACGTG TTGGACATATTTTGATAAT TATATGAGAAATGCATTAGATGGTA A 129911_5270179_ TCCTATAAGTATAGACAGAAAGCAT 120 203 HPV45REF_1_22 AAACCATTATTACAGCTAAAATGTC CTCCAATCCTATTAACATCCAATAT TGATCCAGCAAAAGATAATA AATGGCCATATTTAGAAAGTAGGGT 129911_5270179_ GACGGTATTTACATTTCCACATGCA 120 204 HPV45REF_1_23 TTTCCATTTGATAAAAATGGTAATC CAGTATATGAAATAAATGATAAAAA TTGGAAATGTTTTTTTGAAAG GACATGGTCCAGATTAGATTTGCA 129911_5270179_ CGAGGACGATGAAGATGCAGACACC 120 205 HPV45REF_1_24 GAAGGAATCCCTTTCGGAACGTTTA AGTGCGTTACAGGACAAAATACTAG ACCACTATGAAAATGACA GTAAAGACATAAACAGCCAAATAAG TT 129911_5270179_ ATTGGCAACTTATACGTTTGGAAAA 120 206 HPV45REF_1_25 TGCAATACTATTTACAGCAAGGGAA CATGGTATTACCAAACTAAACCACC AGGTGGTGCCTCCTATTAA CATTTCAAAAAGCAAAGCACATAAA G 129911_5270179_ CTATTGAACTGCAAATGGCCTTAAA 120 207 HPV45REF126 GGGCCTTGCACAAAGCAAGTATAAC AATGAGGAATGGACACTGCAAGATA CATGCGAGGAACTATGGA ATACAGAACCGTCGCAGTGTTTTAA AA 129911_5270179_ AAGGCGGTAAAACCGTGCACGTATA 120 208 HPV45REF_1_27 CTTTGATGGCAACAAGGACAACTGT ATGAACTATGTAGTATGGGACAGTA TATATTATATAACTGAGAC AGGGATATGGGACAAAACAGCAGCA T 129911_5270179_ GTGTTAGCTATTGGGGTGTATATTA 120 209 HPV45REF_1_28 TATAAAAGATGGAGATACCACATAT TATGTACAATTTAAAAGCGAATGTG AGAAATATGGAAATAGTAAT ACGTGGGAAGTACAATATGGGGGCA 129911_5270179_ ATGTAATTGATTGTAATGACTCTAT 120 210 HPV45REF_1_29 GTGCAGTACCAGTGACGACACGGTA TCCGCTACTCAGATTGTTAGACAGC TACAACACGCCTCCACGTC GACCCCCAAAACCGCATCCGTGGGC A 129911_5270179_ CCCCAAAACCCCACATCCAGACGCC 120 211 HPV45REF_1_30 GGCTACTAAGCGACCTAGACAGTGT GGACTCACAGAGCAGCACCACGGAC GTGTCAACACCCACGT GCACAACCCGCTCCTGTGTTCAAGT ACAA 129911_5270179_ GTAACAACAAAAGAAGGAAAGTGTG 120 212 HPV45REF_1_31 TAGTGGTAACACTACGCCTATAATA CACTTAAAAGGTGACAAAAACAGTT TGAAATGTTTAAGATATAG GCTACGCAAATATGCAGACCATTAC T 129911_5270179_ CAGAAATATCCTCCACCTGGCATTG 120 213 HPV45REF_1_32 GACAGGTTGTAATAAAAACACTGGT ATATTAACTGTAACATATAATAGTG AGGTACAAAGAAATACCTTT TTGGATGTAGTTACTATTCCTAACA 129911_5270179_ GTGTACAAATCTCGGTGGGATACAT 120 214 HPV45REF_1_33 GACTATATGAATCTGTATATTGTAT ACAGTATGTAACATTACTATGCTAT CTTTAGTGTTTTTATTGTGCT TTTCTGTGTGCCTTTATGTGTGCT 129911_5270179_ GCAATGTCCCGCTTGTGCAGTCTGT 120 215 HPV45REF_1_34 CTATGTGTGTGCTTTTGCTTGGTTG TTGGTGTTTCTTTTTATAGTTGTTA TTACATCCCCATTAACAGCA TTTGCTGTATACATTTGTTGCTATT 129911_5270179_ TACTACCTATGTTTGTATTACATAT 118 216 HPV45REF_1_35 GCATGCTTTACACACCATACAATAA TTACTATAATGTACAGTACAGTGTA ACATACCTGTGATGTGCATGT TGttgtatttttgtatttttgt 129911_5270180_ tttttgtatttttgtattttATATG 120 217 HPV45REF_2_1 TTTAATAAACCATGGTATCCCACCG TGCAGCACGTCGCAAGCGGGCCTCT GCAACTGACTTATATAGAACATGTA AGC AATCCGGTACGTGCCCC 129911_5270180_ CCCTGATGTTATTAACAAAGTGGAA 120 218 HPV45REF_2_2 GGCACAACCTTAGCTGATAAAATTT TACAGTGGTCTAGCCTTGGGATATT TTTGGGTGGCCTTGGCATT GGTACCGGCAGTGGTTCTGGAGGCC G 129911_5270180_ GTACGGGCTATGTACCCTTAGGGGG 120 219 HPV45REF_2_3 CAGGTCTAATACTGTTGTGGATGTT GGCCCCACTAGGCCACCTGTGGTTA TTGAACCTGTAGGGCCT ACTGATCCATCTATTGTTACGTTGG TAG 129911_5270180_ GAGGATTCCAGTGTTGTTGCCTCTG 120 220 HPV45REF_2_4 GTGCTCCGGTTCCCACATTTACCGG AACCTCTGGGTTTGAAATTACGTCT TCTGGTACTACCACACCA GCTGTGTTGGACATCACACCTACCG TG 129911_5270180_ GGACTCTGTTTCTATTTCGTCAACT 120 221 HPV45REF_2_5 AGTTTTACAAATCCTGCATTTTCTG ATCCCTCTATTATTGAGGTGCCCCA AACAGGGGAGGTATCAGGTA ATATATTTGTTGGTACACCAACATC 129911_5270180_ CGGGCAGCCATGGATATGAGGAAAT 120 222 HPV45REF_2_6 ACCTTTACAAACATTTGCATCTTCT GGGTCAGGTACGGAACCCATTAGTA GTACCCCCCTCCCTACTG TGCGGCGGGTACGGGGTCCCCGCCT GT 129911_5270180_ TATAGTAGGGCTAATCAACAGGTCC 120 223 HPV45REF_2_7 GTGTGTCCACCTCACAGTTTTTAAC ACATCCCTCATCGTTGGTTACATTT GATAATCCAGCTTATGAGC CCCTGGACACCACACTATCCTTTGA G 129911_5270180_ GCCTACCAGTAATGTTCCTGATTCC 120 224 HPV45REF_2_8 GATTTTATGGATATTATTCGTTTGC ATAGGCCAGCATTATCCTCTAGACG TGGCACTGTTAGATTTAGTA GATTGGGTCAAAGGGCAACCATGTT 129911_5270180_ TTACACGTAGTGGTAAACAAATAGG 120 225 HPV45REF_2_9 GGGTAGGGTACATTTTTACCATGAT ATAAGCCCCATTGCTGCTACAGAGG AAATTGAATTGCAGCCTTT AATTAGTGCTACAAATGATAGTGAC C 129911_5270180_ CTGTTTGATGTATATGCAGACTTCC 120 226 HPV45REF_2_10 CACCTCCTGCGTCCACTACACCTAG CACTATACACAAATCATTTACATAT CCAAAGTATTCCTTGACCAT GCCTTCTACTGCTGCATCCTCTTAC 129911_5270180_ CAGTAATGTTACAGTACCATTAACA 120 227 HPV45REF_2_11 TCTGCATGGGATGTACCTATATATA CTGGCCCGGACATTATATTGCCATC CCATACTCCTATGTGGCCT AGTACATCTCCTACCAATGCTTCCA C 129911_5270180_ CCACCACCTATATAGGTATTCATGG 120 228 HPV45REF_2_12 CACACAATATTATTTATGGCCATGG TATTATTATTTTCCTAAAAAACGTA AACGTATTCCCTATTTTTTTG CAGATGGCTTTGTGGCGGCCTAGT 129911_5270180_ TGACAGTACGGTATATCTTCCACCA 120 229 HPV45REF_2_13 CCTTCTGTGGCCAGAGTTGTCAGCA CTGATGATTATGTGTCTCGCACAAG CATATTTTATCATGCAGGC AGTTCCCGATTATTAACTGTAGGCA A 1299115270180_ ATCCATATTTTAGGGTTGTACCTAA 120 230 HPV45REF_2_14 TGGTGCAGGTAATAAACAGGCTGTT CCTAAGGTATCCGCATATCAGTATA GGGTGTTTAGAGTAGCTTT ACCCGATCCTAATAAATTTGGATTA C 129911_5270180_ CCTGATTCTACTATATATAATCCTG 120 231 HPV45REF_2_15 AAACACAACGTTTGGTTTGGGCATG TGTAGGTATGGAAATTGGTCGTGGG CAGCCTTTAGGTATTGGCC TAAGTGGCCATCCATTTTATAATAA A 129911_5270180_ ATTGGATGATACAGAAAGTGCTCAT 120 232 HPV45REF_2_16 GCAGCTACAGCTGTTATTACGCAGG ATGTTAGGGATAATGTGTCAGTTGA TTATAAGCAAACACAGCTG TGTATTTTAGGTTGTGTACCTGCTA T 129911_5270180_ TTGGTGAGCACTGGGCCAAGGGCAC 120 233 HPV45REF_2_17 ACTTTGTAAACCTGCACAATTGCAA CCTGGTGACTGTCCTCCTTTGGAAC TTAAAAACACCATTATTG AGGATGGTGATATGGTGGATACAGG TT 129911_5270180_ TATGGGGCAATGGATTTTAGTACAT 120 234 HPV45REF_2_18 TGCAGGATACAAAGTGCGAGGTTCC ATTAGACATTTGTCAATCCATCTGT AAATATCCAGATTATTTGCA AATGTCTGCTGATCCCTATGGGGAT 129911_5270180_ TTCTATGTTTTTTTCCTACGCUGTG 120 235 HPV45REF_2_19 AACAACTGTTTGCAAGACATTTTTG GAATAGGGCAGGTGTTATGGGTGAC ACAGTACCTACGGACCTA TATATTAAAGGCACTAGCGCTAATA T 129911_5270180_ TGCGTGAAACCCCTGGCAGTTGTGT 120 236 HPV45REF_2_20 GTATTCCCCTTCTCCCAGTGGCTCT ATTATTACTTCTGATTCTCAATTAT TTAATAAGCCATATTGGTTA CATAAGGCCCAGGGCCATAACAATG 129911_5270180_ GGTATTTGTTGGCATAATCAGTTGT 120 237 HPV45REF_2_21 TTGTTACTGTAGTGGACACTACCCG CAGTACTAATTTAACATTATGTGCC TCTACACAAAATCCTGTGCC AAGTACATATGACCCTACTAAGTTT 129911_5270180_ TAAGCAGTATAGTAGACATGTGGAG 120 238 HPV45REF_2_22 GAATATGATTTACAGTTTATTTTTC AGTTGTGCACTATTACTTTAACTGC AGAGGTTATGTCATATATCC ATAGTATGAATAGTAGTATATTAGA 129911_5270180_ AAAATTGGAATTTTGGTGTCCCTCC 120 239 HPV45REF_2_23 ACCACCTACTACAAGTTTGGTGGAT ACATATCGTTTTGTGCAATCAGTTG CTGTTACCTGTCAAAAGGAT ACTACACCTCCAGAAAAGCAGGATC 129911_5270180_ CCATATGATAAATTAAAGTTTTGGA 120 240 HPV45REF_2_24 CTGTTGACCTAAAGGAAAAATTTTC CTCCGATTTGGATCAATATCCCCTT GGTCGAAAGTTTTTAGTTCA GGCTGGGTTACGTCGTAGGCCTACC 129911_5270180_ CATAGGACCTCGTAAGCGTCCTGCT 120 241 HPV45REF_2_25 GCTTCCACGTCTACTGCATCTACTG CATCTAGGCCTGCCAAACGTGTACG TATACGTAGTAAGAAATA ATATGTTAGCACATAtatgtatgtt tg 1299115270181_ gaatgtGCCTTGTGGCATGTATGGT 120 242 HPV45REF_3_1 GTTACTGTACATAATTGTGGTATTA AATAAAGTATGCTAATAGTGTTGTG TAGGGTTGCACCCTTGTGAGT AACAATACTATTTGTGTGTATGTG 129911_5270181_ TATTGCTTTGTACCCTATATTCTTT 120 243 HPV45REF_3_2 CCTGTATTTCAAGTTATAAACTTGC ATACTACACAGCATCCATTTTACTT ATAATCCTCCATTTTGCTGTGC AACCGATTTCGGTTGCCTGTGGC 129911_5270181_ TTATATGTGACCTTTTAAACATAAT 120 244 HPV45REF_3_3 ACCTAAACTGGCACATTTACAACCC CTACATAGTTTAACCTACTGGCGCG CCTTCTTGGCGTACATGTGG CACACCTGGTATTAGTCATTTTCCT 129911_5270181_ GTCCAGGTGTACTAAAACAATGGCT 120 245 HPV45REF_3_4 TGCACAACTGTATCCACACCCTATG TAATAAAACTGCTTTTAGGCACATA TTTTAGTCTGTTTTTACCTG TGCTAATTGTATAATTGGCGTGTAG 129911_5270181_ AACCACTTTCTTATCCAACAATCTG 119 246 HPV45REF_3_5 TCTACTTGTTACATAAACTATAAAC TGACTCACTTATACATACATAGTTT ATGCAACCGAAAAAGGTTGGG CCCTATAACACATACCTTTTCTT

HPV52_SingleStrand_ SEQ SequenceName Sequence Length ID#: 133445_5511603_ TAAATTATAATCTTATACTAGTAAA 120 247 HPV52REF.1(HPV52)_1_1 AAATAGGGTGTAACCGAAAACGGTC AGACCGAAACCGGTGTATATATATA GAACACAGTG TAGCTAACGCACGGCCATGTTTGAG GATCCAGCAA 133445_5511603_ CACGACCCCGGACCCTGCACGAATT 120 248 HPV52REF.1(HPV52)_1_2 GTGTGAGGTGCTGGAAGAATCGGTG CATGAAATAAGGCTGCAGTGTGTGC AGTGCAA AAAAGAGCTACAACGAAGAGAGGTA TACAAGTTTCTAT 133445_5511603_ TTACAGATTTACGAATAGTATATAG 120 249 HPV52REF.1(HPV52)_1_3 AGACAATAATCCATATGGCGTGTGT ATTATGTGCCTACGCTTTTTATCTA AGATAAGTGAA TATAGGCATTATCAATATTCACTGT ATGGGAAAA 133445_5511603_ CATTAGAAGAGAGGGTAAAAAAACC 120 250 HPV52REF.1(HPV52)_1_4 ATTAAGTGAAATAACTATTAGATGT ATAATTTGTCAAACGCCATTATGTC CTGAAGAAAA AGAAAGACATGTTAATGCAAACAAG CGATTTCATA 133445_5511603_ ATATTATGGGTCGTTGGACAGGGCG 120 251 HPV52REF.1(HPV52)_1_5 CTGTTCAGAGTGTTGGAGACCCCGA CCTGTGACCCAAGTGTAACGTCATG CGTGGAG ACAAAGCAACTATAAAAGATTATAT ATTAGATCTGCAA 133445_5511603_ CCTGAAACAACTGACCTACACTGCT 120 252 HPV52REF.1(HPV52)_1_6 ATGAGCAATTAGGTGACAGCTCAGA TGAGGAGGATACAGATGGTGTGGAC CGGCCAG ATGGACAAGCAGAACAAGCCACAAG CAATTACTACATT 133445_5511603_ GTGACATATTGTCACAGTTGTGATA 120 253 HPV52REF.1(HPV52)_1_7 GCACACTACGGCTATGCATTCATAG CACTGCGACGGACCTTCGTACTCTA CAGCAAATG CTGTTGGGCACATTACAAGTTGTGT GCCCCGGCTGT 133445_5511603_ GCACGGCTATAAACAACCCTGCAAT 120 254 HPV52REF.1(HPV52)_1_8 GGAGGACCCTGAAGGTACAGAGGGC GAAAGGGAGGGATGTACAGGCTGGT TTGAAGT AGAGGCAATAATAGAAAAACAAACA GGAGATAACATTT 133445_5511603_ CAGAGGACGAGGATGAAAATGCATA 120 255 HPV52REF.1(HPV52)_1_9 TGATAGTGGAACAGATCTAATAGAT TTTATAGATGATTCAAATATAAATA ATGAACAGGC AGAACATGAGGCAGCCCGGGCATTG TTTAATGCAC 133445_5511603_ AGGAAGGGGAGGATGATTTACATGC 120 256 HPV52REF.1(HPV52)_1_10 TGTGTCTGCAGTAAAACGAAAGTTT ACAAGCAGTCCGGAAAGTGCTGGGC AAGATGGT GTAGAAAAACATGGTAGTCCGCGTG CAAAACACATTT 133445_5511603_ GTGTAAATACAGAGTGTGTTTTACC 120 257 HPV52REF.1(HPV52)_1_11 AAAACGCAAACCATGTCACGTAGAA GACAGCGGCTATGGCAATAGTGAAG TGGAAGCG CAGCAGATGGCAGACCAGGTAGACG GGCAAAATGGCG 133445_5511603_ ACTGGCAAAGTAACAGTAGTCAATC 120 258 HPV52REF.1(HPV52)_1_12 AAGTGGGGTGGGGGCTAGTAATTCA GATGTAAGTTGTACTAGTATAGAGG ACAATGAG GAAAATAGTAATAGAACGCTAAAAA GCATACAAAATA 133445_5511603_ TTATGTGCGAAAATAGCATAAAAAC 120 259 HPV52REF.1(HPV52)_1_13 AACTGTATTATTTAAATTTAAAGAA ACATATGGTGTTAGCTTTATGGAAT TAGTAAGACCA TTTAAAAGTAATAGAAGTAGTTGTA CAGATTGGT 133445_5511603_ GTATTATAGGAATGGGAGTAACACC 120 260 HPV52REF.1(HPV52)_1_14 ATCAGTTGCAGAAGGATTAAAAGTA TTAATACAGCCCTATAGCATATATG CCCATTTGCA ATGTTTAACATGTGACAGAGGCGTG CTTATACTGC 133445_5511603_ TGCTAATTAGGTTTAAATGTGGAAA 120 261 HPV52REF.1(HPV52)_1_15 AAACAGATTAACAGTGTCCAAACTA ATGTCACAGCTGTTAAATATACCAG AAACACATAT GGTAATAGAACCACCAAAATTACGA AGTGCTACCT 133445_5511603_ GTGCATTATATTGGTATAGAACAGG 120 262 HPV52REF.1(HPV52)_1_16 TTTGTCTAATATTAGTGAGGTATAT GGTACCACCCCAGAATGGATAGAAC AACAAACAG TATTACAGCATAGCTTTGACAATAG CATATTCGATT 133445_5511603_ TTGGAGAAATGGTGCAATGGGCATA 120 263 HPV52REF.1(HPV52)_1_17 TGATCATGATATAACAGATGATAGT GACATAGCATATAAATATGCACAGT TAGCAGATG TAAATAGCAATGCTGCAGCATTCCT AAAAAGCAATT 133445_5511603_ CGCAAGCAAAAATAGTAAAGGACTG 120 264 HPV52REF.1(HPV52)_1_18 TGCAACCATGTGTAGACATTATAAA CGGGCAGAAAGAAAACATATGAATA TTGGACAAT GGATACAGTATAGATGTGATAGAAT AGATGATGGTG 133445_5511603_ GAGATTGGAGGCCTATAGTAAGATT 120 265 HPV52REF.1(HPV52)_1_19 TTTAAGATATCAAGACATAGAATTT ACAGCCTTTTTAGACGCATTTAAAA AATTTTTAAAA GGTATACCTAAAAAAAATTGTTTAG TATTATATG 133445_5511603_ GACCTGCAAACACAGGAAAATCATA 120 266 HPV52REF.1(HPV52)_1_20 TTTTGGAATGAGTTTAATTAGGTTC TTAAGTGGATGTGTAATATCCTATG TAAACTCAAA AAGCCATTTTTGGCTACAACCATTA ACAGATGCAA 133445_5511603_ AAGTGGGTATGATAGATGATGTAAC 120 267 HPV52REF.1(HPV52)_1_21 ACCTATATGTTGGACATATATAGAT GATTATATGAGAAATGCACTGGATG GAAATGATAT ATCAGTAGATGTAAAGCATAGAGCC TTAGTACAAA 133445_5511603_ TAAAATGCCCACCATTAATTTTAAC 120 268 HPV52REF.1(HPV52)_1_22 AACAAATACAAATGCAGGAACAGAT CCTAGGTGGCCATATTTACATAGTA GATTGGTTGT GTTTCATTTCAAAAACCCATTTCCA TTTGATGAAA 133445_5511603_ ATGGCAATCCTATATATGAAATTAA 120 269 HPV52REF.1(HPV52)_1_23 CAACGAAAATTGGAAATCCTTTTTC TCAAGGACGTGGTGCAAATTAGATT TAATACAGGA AGAGGACAAGGAAAACGATGGAGTC GATACCGGCA 133445_5511603_ CGTTTAAATGCAGTGCAGGAAAAAA 120 270 HPV52REF.1(HPV52)_1_24 TACTAGATCTATACGAAGCTGATAG TAATGACCTAAACGCACAAATTGAA CATTGGAAAT TGACTCGAATGGAATGTGTTTTGTT TTACAAAGCA 133445_5511603_ AAGGAACTGGGAATAACTCATATAG 120 271 HPV52REF.1(HPV52)_1_25 GCCACCAGGTGGTGCCACCAATGGC AGTGTCTAAGGCAAAGGCCTGCCAA GCTATTG AACTACAATTGGCATTGGAGGCATT AAACAAAACACAA 1334455511603_ TATAGCACAGATGGATGGACATTAC 120 272 HPV52REF.1(HPV52)_1_26 AACAAACAAGTCTAGAAATGTGGCG TGCAGAACCACAAAAATACTTTAAA AAACATGGG TATACAATAACAGTGCAATACGATA ATGATAAAAAC 1334455511603_ AATACTATGGATTATACAAACTGGA 120 273 HPV52REF.1(HPV52)_1_27 AGGAAATTTATTTACTTGGTGAGTG TGAATGTACAATTGTAGAAGGACAA GTAGATTACT ATGGGTTATATTATTGGTGTGATGG AGAAAAAATA 133445_5511603_ TATTTTGTAAAATTTAGTAACGATG 120 274 HPV52REF.1(HPV52)_1_28 CAAAGCAATATTGTGTAACAGGAGT ATGGGAAGTACATGTGGGTGGTCAG GTAATTGTTT GTCCTGCATCTGTATCTAGTAACGA AGTATCCACT 133445_5511603_ ACTGAAACTGCTGTCCACCTATGCA 120 275 HPV52REF.1(HPV52)_1_29 CCGAAACCTCCAAGACCTCCGCAGT GTCCGTGGGTGCCAAAGACACACAC CTACAAC CACCACAGAAACGACGACGACCAGA CGTCACAGACTCC 133445_5511603_ AGAAACACCAAGTACCCCAACAACC 120 276 HPV52REF.1(HPV52)_1_30 TTTTGCGGGGACAACAATCCGTGGA CAGTACTACACGGGGACTCGTCACT GCAACTGA GTGCACAAACAAAGGACGGGTTGCA CATACAACTTGT 1334455511603_ ACTGCACCTATAATACACCTAAAAG 120 277 HPV52REF.1(HPV52)_1_31 GTGATCCTAATAGTTTAAAATGTTT AAGATATAGGGTAAAAACACATAAA AGTTTGTATGT TCAAATTTCATCTACCTGGCATTGG ACCAGTAAT 1334455511603_ GAATGTACAAATAATAAACTAGGTA 120 278 HPV52REF.1(HPV52)_1_32 TTGTAACAATAACGTACAGTGATGA AACACAACGTCAACAATTTTTAAAA ACTGTTAAAAT ACCAAATACTGTGCAAGTTATACAA GGTGTCatg 133445_5511604_ tatatatgtatatgtgtatgGTAAA 120 279 HPV52REF.1(HPV52)_2_1 CACCCAACACAAGCCAATATTGCTG CTATTGTGTATATATAACAATGTTA GGATTATTTGTATTTTGTT TTATTTTGCTTATGGTGTTTTGTGC A 1334455511604_ GTGCTTAGGCCGCTCTTGCTATCTA 120 280 HPV52REF.1(HPV52)_2_2 TATCGGTGTATGCGCAGGTGTTGGT GCTGGTGCTTTTGCTATGGGTATCT ATTGGGTC ACCATTTAAAGTGTTTTTTTTGTAC CTACTGTTTTTA 1334455511604_ TATTTTCCAATGTTTTGTATTCACT 120 281 HPV52REF.1(HPV52)_2_3 GTCATGCACAGTATTTGGCACAACT GCAATAACTGTACATGTAGATTGGC TACATGCATAT ATGCAAAATATACTTTTTCACTTTT GTAGTTTGT 1334455511604_ CTAATAAATACTTTTATATTTTTTA 120 282 HPV52REF.1(HPV52)_2_4 ATAGCTTGTCGCAATGAGATACAGA CGGTCTACACGGCACAAACGTGCTT CTGCAACACA GCTATATCAAACATGCAAAGCCTCT GGCACCTGCC 1334455511604_ CCCCCGATGTTATTCCTAAAGTGGA 120 283 HPV52REF.1(HPV52)_2_5 AGGCACAACTATTGCAGATCAACTT TTAAAATATGGCAGCCTAGGGGTGT TTTTTGGAG GTTTGGGTATAGGTACAGGTGCAGG CTCTGGTGGTA 1334455511604_ GGGCAGGCTATGTGCCATTGTCCAC 120 284 HPV52REF.1(HPV52)_2_6 TCGTCCTCCCACTAGTAGTATTACC ACGTCCACCATTCGTCCCCCTGTAA CTGTAGAA CCCATTGGTCCCTTAGAACCATCTA TAGTTTCTATGA 1334455511604_ TAGAAGAAACAACATTTATTGAGTC 120 285 HPV52REF.1(HPV52)_2_7 TGGCGCACCTGCTCCATCTATTCCA TCAGCAACAGGGTTTGATGTTACAA CATCTGCAA ATAATACTCCTGCAATAATTAATGT AACATCTATAG 1334455511604_ GTGAATCATCTGTACAATCAGTTTC 120 286 HPV52REF.1(HPV52)_2_8 TACACATTTAAATCCTACATTCACT GAACCATCTATAATACAGCCCCCGG CACCTGCAGA AGCATCTGGTCATGTATTGTTTTCT AGTCCAACTA 1334455511604_ TTAGTACACACACCTATGAAGAAAT 120 287 HPV52REF.1(HPV52)_2_9 CCCTATGGATACATTTGTTACCTCT ACTGACAGCAGCAGTGTAACAAGTA GTACACCTAT TCCAGGGTCTCGCCCTACGACACGC CTTGGTTTAT 1334455511604_ ATAGCCGTGCCACACAACAGGTTAA 120 288 HPV52REF.1(HPV52)_2_10 GGTAGTCGACCCTGCTTTTATGTCA TCACCACAGAAATTAGTAACATATA ACAATCCTG TTTTTGAGGGCGTTGATACAGATGA AACTATAATTT 1334455511604_ TTGATCGTTCACAACTTTTACCTGC 120 289 HPV52REF.1(HPV52)_2_11 ACCGGATCCTGATTTTTTAGACATT ATAGCTTTGCATAGGCCTGCATTAA CCTCTCGAAG AGGTACTGTTAGGTTTAGCAGGCTT GGTAATAAGG 1334455511604_ CCACCCTACGTACACGTAGTGGAAA 120 290 HPV52REF.1(HPV52)_2_12 ACAAATTGGGGCACGGGTACATTAT TATCATGATATTAGTCCTATCCAGC CTGCTGAAG TTCAGGAAGACATAGAATTGCAACC TTTATTACCAC 1334455511604_ AGTCTGTGTCCCCTTACACTATTAA 120 291 HPV52REF.1(HPV52)_2_13 TGATGGTTTGTATGATGTGTATGCA GATTCTTTGCAGCAACCCACGTTTC ACTTACCTTC CACACTTTCTACCCATAATAATACT TTCACTGTAC 133445_5511604_ CTATTAATAGTGGTATTGACTTTGT 120 292 HPV52REF.1(HPV52)_2_14 ATATCAACCCACTATGTCCATTGAG TCAGGTCCTGACATTCCATTACCTT CGTTACCCAC ACATACTCCTTTTGTTCCTATAGCC CCTACAGCTC 133445_5511604_ CATCTACATCTATTATTGTTGATGG 120 293 HPV52REF.1(HPV52)_2_15 TACAGATTTTATTTTACATCCTAGT TATTTTTTACTACGTCGCAGGCGTA AACGTTTTCCA TATTTTTTTACAGATGTCCGTGTGG CGGCCTAGT 1334455511604_ GAGGCCACTGTGTACCTGCCTCCTG 120 294 HPV52REF.1(HPV52)_2_16 TACCTGTCTCTAAGGTTGTAAGCAC TGATGAGTATGTGTCTCGCACAAGC ATCTATTAT 1334455511604_ CCCTATTTTTCTATTAAAAACACCA 120 295 HPV52REF.1(HPV52)_2_17 GTAGTGGTAATGGTAAAAAAGTTTT AGTTCCCAAGGTGTCTGGCCTGCAA TACAGGGTAT TTAGAATTAAATTGCCGGACCCTAA TAAATTTGGT 1334455511604_ TTTCCAGATACATCTTTTTATAACC 120 296 HPV52REF.1(HPV52)_2_18 CAGAAACCCAAAGGTTGGTGTGGGC CTGTACAGGCTTGGAAATTGGTAGG GGACAGCC TTTAGGTGTGGGTATTAGTGGGCAT CCTTTATTAAAC 1334455511604_ AAGTTTGATGATACTGAAACCAGTA 120 297 HPV52REF.1(HPV52)_2_19 ACAAATATGCTGGTAAACCTGGTAT AGATAATAGGGAATGTTTATCTATG GATTATAAGC AGACTCAGTTATGCATTTTAGGATG CAAACCTCCT 1334455511604_ ATAGGTGAACATTGGGGTAAGGGAA 120 298 HPV52REF.1(HPV52)_2_20 CCCCTTGTAATAATAATTCAGGAAA TCCTGGGGATTGTCCTCCCCTACAG CTCATTAAC AGTGTAATACAGGATGGGGACATGG TAGATACAGGA 1334455511604_ TTTGGTTGCATGGATTTTAATACCT 120 299 HPV52REF.1(HPV52)_2_21 TGCAAGCTAGTAAAAGTGATGTGCC CATTGATATATGTAGCAGTGTATGT AAGTATCCAG ATTATTTGCAAATGGCTAGCGAGCC ATATGGTGAC 1334455511604_ AGTTTGTTCTTTTTTcTTAGACGTG 120 300 HPV52REF.1(HPV52)_2_22 AGCAAATGTTTGTTAGACACTTTTT TAATAGGGCCGGTACCTTAGGTGAC CCTGTGCCAG GTGATTTATATATACAAGGGTCTAA CTCTGGCAAT 1334455511604_ ACTGCCACTGTACAAAGCAGTGCTT 120 301 HPV52REF.1(HPV52)_2_23 TTTTTCCTACTCCTAGTGGTTCTAT GGTAACCTCAGAATCCCAATTATTT AATAAACCGT ACTGGTTACAACGTGCGCAGGGCCA CAATAATGGC 1334455511604_ ATATGTTGGGGCAATCAGTTGTTTG 120 302 HPV52REF.1(HPV52)_2_24 TCACAGTTGTGGATACCACTCGTAG CACTAACATGACTTTATGTGCTGAG GTTAAAAAG GAAAGCACATATAAAAATGAAAATT TTAAGGAATAC 1334455511604_ CTTCGTCATGGCGAGGAATTTGATT 120 303 HPV52REF.1(HPV52)_2_25 TACAATTTATTTTTCAATTGTGCAA AATTACATTAACAGCTGATGTTATG ACATACATTCA TAAGATGGATGCCACTATTTTAGAG GACTGGCAA 1334455511604_ TTTGGCCTTACCCCACCACCGTCTG 120 304 HPV52REF.1(HPV52)_2_26 CATCTTTGGAGGACACATACAGATT TGTCACTTCTACTGCTATAACTTGT CAAAAAAACA CACCACCTAAAGGAAAGGAAGATCC TTTAAAGGAC 1334455511604_ TATATGTTTTGGGAGGTGGATTTAA 120 305 HPV52REF.1(HPV52)_2_27 AAGAAAAGTTTTCTGCAGATTTAGA TCAGTTTCCTTTAGGTAGGAAGTTT TTGTTACAGG CAGGGCTACAGGCTAGGCCCAAACT AAAACGCCCT 1334455511604_ GCATCATCGGCCCCACGTACCTCCA 120 306 HPV52REF.1(HPV52)_2_28 CAAAGAAGAAAAAGGTTAAAAGGTA ACCATTGTCTGTTGGGTAATTGTCT GTGTCATGT ATGTGTTGTGTATGTCAAACACAGG TTAAAAGGTAA 1334455511604_ CCATTGTTTGTTATGTAATTGTTTT 120 307 HPV52REF.1(HPV52)_2_29 GTGTGTGTACTGTGTTGTTTGCATG TTATGTATGTGTGTGCATGTTTGTT GTATTTGTCAG TTCCTGTATGTATGTTTTGTGTATG TATTAATAA 1334455511604_ AGTACTGTATTTACTAAACTATTTA 117 308 HPV52REF.1(HPV52)_2_30 TAGTAGTCTTATGTTATGTTATGGT TGCACCCACATGAGTAACAATACAG TTGCTCCTAAT CTATTGCATCTcctgccctaccctg tgtccc 133445_5511605_ ccctaccctgTGTCCTACTTTGTTA 120 309 HPV52REF.1(HPV52)_3_1 CACTACTAATTAGCCTTATACTCTC CATTTTGTACCATTTTGTACTATCC ACCATTTTAAATCCT AACCGAATTCGGTTGGTCTTGGCAC AACTT 133445_5511605_ TGGTTGTCCTTGGCACAGTAACAAC 120 310 HPV52REF.1(HPV52)_3_2 TATTTTTATATAAGTTTCAGCAAAC TGCTTAATCCTTTGGTTTCCTGCAG TCCACTGGTC TACACTTGTTGTCCCGCCTAAACTG ACTTCTTGCT 133445_5511605_ GACTCACAGGTCCTGCAGTGCAGCT 120 311 HPV52REF.1(HPV52)_3_3 AAACAATACATTGCCTAACATTGCA TGTTTTAAACTGCTTTTAGGCACAT ATTTTATTTA AACTTTCAATGCACTAATTACAGTG TTGGCTTACA 133445_5511605_ CAAGTACATCCTACGCCAAATATGT 119 312 HPV52REF.1(HPV52)_3_4 CTTGTAAAACATGATTAAATACTGT TACTCACCAGGTGTGCACTACACGA CCGGTTACG GTTACCGTACCCACAACCACTTTTT TTTATAATTA

HPV16_DoubleStrand_ SequenceName sequence Length SEQ ID#: 88160_3764094_ ACTACAATAATTCATGTATAAAACT 120 313 HPV16_1_1 AAGGGCGTAACCGAAATCGGTTGAA CCGAAACCGGTTAGTATAAAAGC AGACATTTTATGCACCAAAAGAGAA CTGCAATGTTTCAGGACCCACA 88160_3764094_ GGAGCGACCCAGAAAGTTACCACAG 120 314 HPV16_1_2 TTATGCACAGAGCTGCAAACAACTA TACATGATATAATATTAGAATGT GTGTACTGCAAGCAACAGTTACTGC GACGTGAGGTATATGACTTTGC 88160_3764094_ TTTTCGGGATTTATGCATAGTATAT 120 315 HPV16_1_3 AGAGATGGGAATCCATATGCTGTAT GTGATAAATGTTTAAAGTTTTATT CTAAAATTAGTGAGTATAGACATTA TTGTTATAGTTTGTATGGAAC 88160_3764094_ AACATTAGAACAGCAATACAACAAA 120 316 HPV16_1_4 CCGTTGTGTGATTTGTTAATTAGGT GTATTAACTGTCAAAAGCCACTG TGTCCTGAAGAAAAGCAAAGACATC TGGACAAAAAGCAAAGATTCCA 88160_3764094_ TAATATAAGGGGTCGGTGGACCGGT 120 317 HPV16_1_5 CGATGTATGTCTTGTTGCAGATCAT CAAGAACACGTAGAGAAACCCA GCTGTAATCATGCATGGAGATACAC CTACATTGCATGAATATATGTTA 88160_3764094_ GATTTGCAACCAGAGACAACTGATC 120 318 HPV16_1_6 TCTACTGTTATGAGCAATTAAATGA CAGCTCAGAGGAGGAGGATGAA ATAGATGGTCCAGCTGGACAAGCAG AACCGGACAGAGCCCATTACAAT 88160_3764094_ ATTGTAACCTTTTGTTGCAAGTGTG 120 319 HPV16_1J ACTCTACGCTTCGGTTGTGCGTACA AAGCACACACGTAGACATTCGTA CTTTGGAAGACCTGTTAATGGGCAC ACTAGGAATTGTGTGCCCCATC 88160_3764094_ TGTTCTCAGAAACCATAATCTACCA 120 320 HPV16_1_8 TGGCTGATCCTGCAGGTACCAATGG GGAAGAGGGTACGGGATGTAAT GGATGGTTTTATGTAGAGGCTGTAG TGGAAAAAAAAACAGGGGATGCT 88160_3764094_ ATATCAGATGACGAGAACGAAAATG 120 321 HPV16_1_9 ACAGTGATACAGGTGAAGATTTGGT AGATTTTATAGTAAATGATAATG ATTATTTAACACAGGCAGAAACAGA GACAGCACATGCGTTGTTTACT 88160_3764094_ GCACAGGAAGCAAAACAACATAGAG 120 322 HPV16_1_10 ATGCAGTACAGGTTCTAAAACGAAA GTATTTGGGTAGTCCACTTAGT GATATTAGTGGATGTGTAGACAATA ATATTAGTCCTAGATTAAAAGCT 88160_3764094_ ATATGTATAGAAAAACAAAGTAGAG 120 323 HPV16_1_11 CTGCAAAAAGGAGATTATTTGAAAG CGAAGACAGCGGGTATGGCAAT ACTGAAGTGGAAACTCAGCAGATGT TACAGGTAGAAGGGCGCCATGAG 88160_3764094_ ACTGAAACACCATGTAGTCAGTATA 120 324 HPV16_1_12 GTGGTGGAAGTGGGGGTGGTTGCAG TCAGTACAGTAGTGGAAGTGG GGGAGAGGGTGTTAGTGAAAGACAC ACTATATGCCAAACACCACTTACA 88160_3764094_ AATATTTTAAATGTACTAAAAACTA 120 325 HPV16_1_13 GTAATGCAAAGGCAGCAATGTTAGC AAAATTTAAAGAGTTATACGGGGT GAGTTTTTCAGAATTAGTAAGACCA TTTAAAAGTAATAAATCAACG 88160_3764094_ TGTTGCGATTGGTGTATTGCTGCAT 120 326 HPV16_1_14 TTGGACTTACACCCAGTATAGCTGA CAGTATAAAAACACTATTACAAC AATATTGTTTATATTTACACATTCA AAGTTTAGCATGTTCATGGGGA 88160_3764094_ ATGGTTGTGTTACTATTAGTAAGAT 120 327 HPV16_1_15 ATAAATGTGGAAAAAATAGAGAAAC AATTGAAAAATTGCTGTCTAAACT ATTATGTGTGTCTCCAATGTGTATG ATGATAGAGCCTCCAAAATTG 88160_3764094_ CGTAGTACAGCAGCAGCATTATATT 120 328 HPV16_1_16 GGTATAAAACAGGTATATCAAATAT TAGTGAAGTGTATGGAGACACGC CAGAATGGATACAAAGACAAACAGT ATTACAACATAGTTTTAATGAT 88160_3764094_ TGTACATTTGAATTATCACAGATGG 120 329 HPV16_1_17 TACAATGGGCCTACGATAATGACAT AGTAGACGATAGTGAAATTGCAT ATAAATATGCACAATTGGCAGACAC TAATAGTAATGCAAGTGCCTTT 88160_3764094_ CTAAAAAGTAATTCACAGGCAAAAA 120 330 HPV16_1_18 TTGTAAAGGATTGTGCAACAATGTG TAGACATTATAAACGAGCAGAAA AAAAACAAATGAGTATGAGTCAATG GATAAAATATAGATGTGATAGG 88160_3764094_ GTAGATGATGGAGGTGATTGGAAGC 120 331 HPV16_1_19 AAATTGTTATGTTTTTAAGGTATCA AGGTGTAGAGTTTATGTCATTTT TAACTGCATTAAAAAGATTTTTGCA AGGCATACCTAAAAAAAATTGC 88160_3764094_ ATATTACTATATGGTGCAGCTAACA 120 332 HPV16_1_20 CAGGTAAATCATTATTTGGTATGAG TTTAATGAAATTTCTGCAAGGGTC TGTAATATGTTTTGTAAATTCTAAA AGCCATTTTTGGTTACAACCA 88160_3764094_ TTAGCAGATGCCAAAATAGGTATGT 120 333 HPV16_1_21 TAGATGATGCTACAGTGCCCTGTTG GAACTACATAGATGACAATTTAA GAAATGCATTGGATGGAAATTTAGT TTCTATGGATGTAAAGCATAGA 88160_3764094_ CCATTGGTACAACTAAAATGCCCTC 120 334 HPV16_1_22 CATTATTAATTACATCTAACATTAA TGCTGGTACAGATTCTAGGTGGC CTTATTTACATAATAGATTGGTGGT GTTTACATTTCCTAATGAGTTT 88160_3764094_ CCATTTGACGAAAACGGAAATCCAG 120 335 HPV16_1_23 TGTATGAGCTTAATGATAAGAACTG GAAATCCTTTTTCTCAAGGACGT GGTCCAGATTAAGTTTGCACGAGGA CGAGGACAAGGAAAACGATGGA 88160_3764094_ GACTCTTTGCCAACGTTTAAATGTG 120 336 HPV16_1_24 TGTCAGGACAAAATACTAACACATT ATGAAAATGATAGTACAGACCTA CGTGACCATATAGACTATTGGAAAC ACATGCGCCTAGAATGTGCTAT 88160_3764094_ TTATTACAAGGCCAGAGAAATGGGA 120 337 HPV16_1_25 TTTAAACATATTAACCACCAGGTGG TGCCAACACTGGCTGTATCAAA GAATAAAGCATTACAAGCAATTGAA CTGCAACTAACGTTAGAAACAAT 88160_3764094_ ATATAACTCACAATATAGTAATGAA 120 338 HPV16_1_26 AAGTGGACATTACAAGACGTTAGCC TTGAAGTGTATTTAACTGCACCA ACAGGATGTATAAAAAAACATGGAT ATACAGTGGAAGTGCAGTTTGA 88160_3764094_ TGGAGACATATGCAATACAATGCAT 120 339 HPV16_1_27 TATACAAACTGGACACATATATATA TTTGTGAAGAAGCATCAGTAACT GTGGTAGAGGGTCAAGTTGACTATT ATGGTTTATATTATGTTCATGA 88160_3764094_ AGGAATACGAACATATTTTGTGCAG 120 340 HPV16_1_28 TTTAAAGATGATGCAGAAAAATATA GTAAAAATAAAGTATGGGAAGTT CATGCGGGTGGTCAGGTAATATTAT GTCCTACATCTGTGTTTAGCAG 88160_3764094_ CAACGAAGTATCCTCTCCTGAAATT 120 341 HPV16_1_29 ATTAGGCAGCACTTGGCCAACCACC CCGCCGCGACCCATACCAAAGC CGTCGCCTTGGGCACCGAAGAAACA CAGACGACTATCCAGCGACCAAG 88160_3764094_ ATCAGAGCCAGACACCGGAAACCCC 120 342 HPV16_1_30 TGCCACACCACTAAGTTGTTGCACA GAGACTCAGTGGACAGTGCTC CAATCCTCACTGCATTTAACAGCTC ACACAAAGGACGGATTAACTGTAA 88160_3764094_ TAGTAACACTACACCCATAGTACAT 120 343 HPV16_1_31 TTAAAAGGTGATGCTAATACTTTAA AATGTTTAAGATATAGATTTAAAA AGCATTGTACATTGTATACTGCAGT GTCGTCTACATGGCATTGGAC 88160_3764094_ AGGACATAATGTAAAACATAAAAGT 120 344 HPV16_1_32 GCAATTGTTACACTTACATATGATA GTGAATGGCAACGTGACCAATTTT TGTCTCAAGTTAAAATACCAAAAAC TATTACAGTGTCTACTGGATT 88160_3764094_ TATGTCTATATGACAAATCTTGATA 120 345 HPV16_1_33 CTGCATCCACAACATTACTGGCGTG CTTTTTGCTTTGCTTTTGTGTGCT TTTGTGTGTCTGCCTATTAATACGT CCGCTGCTTTTGTCTGTGTCT 88160_3764094_ ACATACACATCATTAATAATATTGG 120 346 HPV16_1_34 TATTACTATTGTGGATAACAGCAGC CTCTGCGTTTAGGTGTTTTATTGT ATATATTATATTTGTTTATATACCA TTATTTTTAATACATACACAT 88160_3764095_ tttttttttttgtttgtttgtttgt 120 347 HPV16_2_1 tttttAATAAACTGTTATTACTTAA CAATGCGACACAAACGTTCTGCAAA ACGCACAAAACGTG CATCGGCTACCCAACTTTATAAAAC ATGCAA 88160_3764095_ ACAGGCAGGTACATGTCCACCTGAC 120 348 HPV16_2_2 ATTATACCTAAGGTTGAAGGCAAAA CTATTGCTGATCAAATATTACAA TATGGAAGTATGGGTGTATTTTTTG GTGGGTTAGGAATTGGAACAGG 88160_3764095_ GTCGGGTACAGGCGGACGCACTGGG 120 349 HPV16_2_3 TATATTCCATTGGGAACAAGGCCTC CCACAGCTACAGATACACTTG CTCCTGTAAGACCCCCTTTAACAGT AGATCCTGTGGGCCCTTCTGATCC 88160_3764095_ TTCTATAGTTTCTTTAGTGGAAGAA 120 350 HPV16_2_4 ACTAGTTTTATTGATGCTGGTGCAC CAACATCTGTACCTTCCATTCCCC CAGATGTATCAGGATTtagtattac tacttcaactgataccacacc 88160_3764096_ tattagatattaataatactgttac 120 351 HPV16_3_1 tactgttactacACATAATAATCCC ACTTTCACTGACCCATCTGTATTGC AGCCTCCAACAC CTGCAGAAACTGGAGGGCATTTTAC ACTTTCAT 88160_3764096_ CATCCACTATTAGTACACATAATTA 120 352 HPV16_3_2 TGAAGAAATTCCTATGGATACATTT ATTGTTAGCACAAACCCTAACACA GTAACTAGTAGCACACCCATACCAG GGTCTCGCCCAGTGGCACGCC 88160_3764096_ TAGGATTATATAGTCGCACAACACA 120 353 HPV16_3_3 ACAGGTTAAAGTTGTAGACCCTGCT TTTGTAACCACTCCCACTAAACT TATTACATATGATAATCCTGCATAT GAAGGTATAGATGTGGATAATA 88160_3764096_ CATTATATTTTTCTAGTAATGATAA 120 354 HPV16_3_4 TAGTATTAATATAGCTCCAGATCCT GACTTTTTGGATATAGTTGCTTTAC ATAGGCCAGCATTAACCTCTAGGCG TACTGGCATTAGGTACAGTA 88160_3764096_ GAATTGGTAATAAACAAACACTACG 120 355 HPV16_3_5 TACTCGTAGTGGAAAATCTATAGGT GCTAAGGTACATTATTATTATGAT TTAAGTACTATTGATCCTGCAGAAG AAATAGAATTACAAACTATAA 88160_3764096_ CACCTTCTACATATACTACCACTTC 120 356 HPV16_3_6 ACATGCAGCCTCACCTACTTCTATT AATAATGGATTATATGATATTTAT GCAGATGACTTTATTACAGATACTT CTACAACCCCGGTACCATCTG 88160_3764096_ TACCCTCTACATCTTTATCAGGTTA 120 357 HPV16_3_7 TATTCCTGCAAATACAACAATTCCT TTTGGTGGTGCATACAATATTCCT TTAGTATCAGGTCCTGATATACCCA TTAATATAACTGACCAAGCTC 88160_3764096_ CTTCATTAATTCCTATAGTTCCAGG 120 358 HPV16_3_8 GTCTCCACAATATACAATTATTGCT GATGCAGGTGACTTTTATTTACAT CCTAGTTATTACATGTTACGAAAAC GACGTAAACGTTTACCATATT 88160_3764096_ TTTTTTCAGATGTCTCTTTGGCTGC 120 359 HPV16_3_9 CTAGTGAGGCCACTGTCTACTTGCC TCCTGTCCCAGTATCTAAGGTTG TAAGCACGGATGAATATGTTGCACG CACAAACATATATTATCATGCA 88160_3764096_ GGAACATCCAGACTACTTGCAGTTG 120 360 HPV16_3_10 GACATCCCTATTTTCCTATTAAAAA ACCTAACAATAACAAAATATTAGT TCCTAAAGTATCAGGATTACAATAC AGGGTATTTAGAATACATTTA 88160_3764096_ CCTGACCCCAATAAGTTTGGTTTTC 120 361 HPV16_3_11 CTGACACCTCATTTTATAATCCAGA TACACAGCGGCTGGTTTGGGCCT GTGTAGGTGTTGAGGTAGGTCGTGG TCAGCCATTAGGTGTGGGCATT 88160_3764096_ AGTGGCCATCCTTTATTAAATAAAT 120 362 HPV16_3_12 TGGATGACACAGAAAATGCTAGTGC TTATGCAGCAAATGCAGGTGTGG ATAATAGAGAATGTATATCTATGGA TTACAAACAAACACAATTGTGT 88160_3764096_ TTAATTGGTTGCAAACCACCTATAG 120 363 HPV16_3_13 GGGAACACTGGGGCAAAGGATCCCC ATGTACCAATGTTGCAGTAAAT CCAGGTGATTGTCCACCATTAGAGT TAATAAACACAGTTATTCAGGAT 88160_3764096_ GGTGATATGGTTGATACTGGCTTTG 120 364 HPV16_3_14 GTGCTATGGACTTTACTACATTACA GGCTAACAAAAGTGAAGTTCCAC TGGATATTTGTACATCTATTTGCAA ATATCCAGATTATATTAAAATG 88160_3764096_ GTGTCAGAACCATATGGCGACAGCT 120 365 HPV16_3_15 TATTTTTTTATTTACGAAGGGAACA AATGTTTGTTAGACATTTATTTAA TAGGGCTGGTACTGTTGGTGAAAAT GTACCAGACGATTTATACATT 88160_3764096_ AAAGGCTCTGGGTCTACTGCAAATT 120 366 HPV16_3_16 TAGCCAGTTCAAATTATTTTCCTAC ACCTAGTGGTTCTATGGTTACCT CTGATGCCCAAATATTCAATAAACC TTATTGGTTACAACGAGCACAG 88160_3764096_ GGCCACAATAATGGCATTTGTTGGG 120 367 HPV16_3_17 GTAACCAACTATTTGTTACTGTTGT TGATACTACACGCAGTACAAATA TGTCATTATGTGCTGCCATATCTAC TTCAGAAACTACATATAAAAAT 88160_3764096_ ACTAACTTTAAGGAGTACCTACGAC 120 368 HPV16_3_18 ATGGGGAGGAATATGATTTACAGTT TATTTTTCAACTGTGCAAAATAA CCTTAACTGCAGACGTTATGACATA CATACATTCTATGAATTCCACT 88160_3764096_ ATTTTGGAGGACTGGAATTTTGGTC 120 369 HPV16_3_19 TACAACCTCCCCCAGGAGGCACACT AGAAGATACTTATAGGTTTGTAA CATCCCAGGCAATTGCTTGTCAAAA ACATACACCTCCAGCACCTAAA 88160_3764096_ GAAGATCCCCTTAAAAAATACACTT 120 370 HPV16_3_20 TTTGGGAAGTAAATTTAAAGGAAAA GTTTTCTGCAGACCTAGATCAGTT TCCTTTAGGACGCAAATTTTTACTA CAAGCAGGATTGAAGGCCAAA 88160_3764096_ CCAAAATTTACATTAGGAAAACGAA 120 371 HPV16_3_21 AAGCTACACCCACCACCTCATCTAC CTCTACAACTGCTAAACGCAAAA AACGTAAGCtgtaagtattgtatgt atgttgaattagtgttgtttgt 88160_3764097_ GTCATGCAACATAAATAAACTTATT 120 372 HPV16_4_2 GTTTCAACACCTACTAATTGTGTTG TGGTTATTCATTGTATATAAACTAT ATTTGCTACATCCTGTTTTTGTTTT ATATATACTATATTTTGTAG 88160_3764097_ CGCCAGCGGCCATTTTGTAGCTTCA 120 373 HPV16_4_3 ACCGAATTCGGTTGCATGCTTTTTG GCACAAAATGTGTTTTTTTAAAT AGTTCTATGTCAGCAACTATGGTTT AAACTTGTACGTTTCCTGCTTG 88160_3764097_ CCATGCGTGCCAAATCCCTGTTTTC 120 374 HPV16_4_4 CTGACCTGCACTGCTTGCCAACCAT TCCATTGTTTTTTACACTGCACT ATGTGCAACTACTGAATCACTATGT ACATTGTGTCATATAAAATAAA 88160_3764097_ TCACTATGCGCCAACGCCTTACATA 120 375 HPV16_4_5 CCGCTGTTAGGCACATATTTTTGGC TTGTTTTAACTAACCTAATTGCA TATTTGGCATAAGGTTTAAACTTCT AAGGCCAACTAAATGTCACCCT 88160_3764097_ AGTTCATACATGAACTGTGTAAAGG 120 376 HPV16_4_6 TTAGTCATACATTGTTCATTTGTAA AACTGCACATGGGTGTGTGCAAA CCGTTTTGGGTTACACATTTACAAG CAACTTATATAATAATACTAA 133919_5536530_ TATCATGTATAGTTGTTTGCAGCTC 120 377 KP212157.1-HPV16- TGTGCATAACTGTGGTAACTTTCTG CNA138_1_2-REV GGTCGCTCCTGTGGGTCCTGAAA CATTGCAGTTCTCTTTTGGTGCATA AAATGTCTGCTTTTATACTAAC 133919_5536530_ TTATCACATACAGCATATGGATTCC 120 378 KP212157.1-HPV16- CATCTCTATATACTATGCATAAATC CNA138_1_4-REV CCGAAAAGCAAAGTCATATACCTC ACGTCGCAGTAACTGTTGCTTGCAG TACACACATTCTAATATTATA 133919_5536530_ AATACACCTAATTAACAAATCACAC 120 379 KP212157.1-HPV16- AACGGTTTGTTGTATTGCTGTTCTA CNA138_1_6-REV ATGTTGTTCCATACAAACTATAAC AATAATGTCTATACTCACTAATTTT AGAATAAAACTTTAAACATTT 133919_5536530_ TTGATGATCTGCAACAAGACATACA 120 380 KP212157.1-HPV16- TCGACCGGTCCACCGACCCCTTATA CNA138_1_8-REV TTATGGAATCTTTGCTTTTTGTC CAGATGTCTTTGCTTTTCTTCAGGA CACAGTGGCTTTTGACAGTTAA 133919_5536530_ GTCATTTAATTGCTCATAACAGTAG 120 381 KP212157.1-HPV16- AGATCAGTTGTCTCTGGTTGCAAAT CNA138_1_10-REV CTAACATATATTCATGCAATGTAG GTGTATCTCCATGCATGATTACAGC TGGGTTTCTCTACGTGTTCTT 133919_5536530_ GTACGCACAACCGAAGCGTAGAGTC 120 382 KP212157.1-HPV16- ACACTTGCAACAAAAGGTTACAATA CNA138_1_12-REV TTGTAATGGGCTCTGTCCGGTT CTGCTTGTCCAGCTGGACCATCTAT TTCATCCTCCTCCTCTGAGCTGT 133919_5536530_ TTGGTACCTGCAGGATCAGCCATGG 120 383 KP212157.1-HPV16- TAGATTATGGTTTCTGAGAACAGAT CNA138_1_14-REV GGGGCACACAATTCCTAGTGTG CCCATTAACAGGTCTTCCAAAGTAC GAATGTCTACGTGTGTGCTTTGT 133919_5536530_ ATCTTCACCTGTATCACTGTCATTT 120 384 KP212157.1-HPV16- TCGTTCTCGTCATCTGATATAGCAT CNA138_1_16-REV CCCCTGTTTTTTTTTCCACTACAG CCTCTACATAAAACCATCCATTACA TCCCGTACCCTCTTCCCCATT 133919_5536530_ TTAGAACCTGTACTGCATCTCTATG 120 385 KP212157.1-HPV16- TTGTTTTGCTTCCTGTGCAGTAAAC CNA138_1_18-REV AACGCATGTGCTGTCTCTGTTTC TGCCTGTGTTAAATAATCATTATCA TTTACTATAAAATCTACCAAAT 133919_5536530_ AATCTCCTTTTTGCAGCTCTACTTT 120 386 KP212157.1-HPV16- GTTTTTCTATACATATAGCTTTTAA CNA138_1_20-REV TCTAGGACTAATATTATTGTCTACA CATCCACTAATATCACTAAGTGGAC TACCCAAATACTTTCGTTTT 133919_5536530_ CCCACTTCCACCACTATACTGACTA 120 387 KP212157.1-HPV16- CATGGTGTTTCAGTCTCATGGCGCC CNA138_1_22-REV CTTCTACCTGTAACATCTGCTGA GTTTCCACTTCAGTATTGCCATACC CGCTGTCTTCGCTTTCAAATAA 133919_5536530_ CCTTTGCATTACTAGTTTTTAGTAC 120 388 KP212157.1-HPV16- ATTTAAAATATTTGTAAGTGGTGTT CNA138_1_24-REV TGGCATATAGTGTGTCTTTCACTA ACACCCTCTCCCCCACTTCCACTAC TGTACTGACTGCAACCACCCC 133919_5536530_ GTAAGTCCAAATGCAGCAATACACC 120 389 KP212157.1-HPV16- AATCGCAACACGTTGATTTATTACT CNA138_1_26-REV TTTAAATGGTCTTACTAATTCTGA AAAACTCACCCCGTATAACTCTTTA AATTTTGCTAACATTGCTGCC 133919_5536530_ ACATTTATATCTTACTAATAGTAAC 120 390 KP212157.1-HPV16- ACAACCATTCCCCATGAACATGCTA CNA138_1_28-REV AACTTTGAATGTGTAAATATAAAC AATATTGTTGTAATAGTGTTTTTAT ACTGTCAGCTATACTGGGTGT 133919_5536530_ TATACCAATATAATGCTGCTGCTGT 120 391 KP212157.1-HPV16- ACTACGCAATTTTGGAGGCTCTATC CNA138_1_30-REV ATCATACACATTGGAGACACACA TAATAGTTTAGACAGCAATTTTTCA ATTGTTTCTCTATTTTTTCCAC 133919_5536530_ TGTACCATCTGTGATAATTCAAATG 120 392 KP212157.1-HPV16- TACAATCATTAAAACTATGTTGTAA CNA138_1_32-REV TACTGTTTGTCTTTGTATCCATTCT GGCGTGTCTCCATACACTTCACTAA TATTTGATATACCTGTTTTA 133919_5536530_ AATTTTTGCCTGTGAATTACTTTTT 120 393 KP212157.1-HPV16- AGAAAGGCACTTGCATTACTATTAG CNA138_1_34-REV TGTCTGCCAATTGTGCATATTTAT ATGCAATTTCACTATCGTCTACTAT GTCATTATCGTAGGCCCATTG 133919_5536530_ GCTTCCAATCACCTCCATCATCTAC 120 394 KP212157.1-HPV16- CCTATCACATCTATATTTTATCCAT CNA138_1_36-REV TGACTCATACTCATTTGTTTTTTTT CTGCTCGTTTATAATGTCTACACAT TGTTGCACAATCCTTTACAA 133919_5536530_ TTAGCTGCACCATATAGTAATATGC 120 395 KP212157.1-HPV16- AATTTTTTTTAGGTATGCCTTGCAA CNA138_1_38-REV AAATCTTTTTAATGCAGTTAAAAAT GACATAAACTCTACACCTTGATACC TTAAAAACATAACAATTTGC 133919_5536530_ ACCTATTTTGGCATCTGCTAATGGT 120 396 KP212157.1-HPV16- TGTAACCAAAAATGGCTTTTAGAAT CNA138_1_40-REV TTACAAAACATATTACAGACCCTT GCAGAAATTTCATTAAACTCATACC AAATAATGATTTACCTGTGTT 133919_5536530_ ATTTTAGTTGTACCAATGGTCTATG 120 397 KP212157.1-HPV16- CTTTACATCCATAGAAACTAAATTT CNA138_1_42-REV CCATCCAATGCATTTCTTAAATTGT CATCTATGTAGTTCCAACAGGGCAC TGTAGCATCATCTAACATAC 133919_5536530_ CCGTTTTCGTCAAATGGAAACTCAT 120 398 KP212157.1-HPV16- TAGGAAATGTAAACACCACCAATCT CNA138_1_44-REV ATTATGTAAATAAGGCCACCTAG AATCTGTACCAGCATTAATGTTAGA TGTAATTAATAATGGAGGGCAT 133919_5536530_ CGTTGGCAAAGAGTCTCCATCGTTT 120 399 KP212157.1-HPV16- TCCTTGTCCTCGTCCTCGTGCAAAC CNA138_1_46-REV TTAATCTGGACCACGTCCTTGA GAAAAAGGATTTCCAGTTCTTATCA TTAAGCTCATACACTGGATTTCC 133919_5536530_ GGCCTTGTAATAAATAGCACATTCT 120 400 KP212157.1-HPV16- AGGCGCATGTGTTTCCAATAGTCTA CNA138_1_48-REV TATGGTCACGTAGGTCTGTACTA TCATTTTCATAATGTGTTAGTATTT TGTCCTGACACACATTTAAACG 133919_5536530_ GTGAGTTATATATTGTTTCTAACGT 120 401 KP212157.1-HPV16- TAGTTGCAGTTCAATTGCTTGTAAT CNA138_1_50-REV GCTTTATTCTTTGATACAGCCAGT GTTGGCACCACCTGGTGGTTAATAT GTTTAAATCCCATTTCTCTGG 133919_5536530_ ATGTCTCCATCAAACTGCACTTCCA 120 402 KP212157.1-HPV16- CTGTATATCCATGTTTTTTTATACA CNA138_1_52-REV TCCTGTTGGTGCAGTTAAATACAC TTCAAGGCTAACGTCTTGTAATGTC CACTTTTCATTACTATATTGT 133919_5536530_ TATTCCTTCATGAACATAATATAAA 120 403 KP212157.1-HPV16- CCATAATAGTCAACTTGACCCTCTA CNA138_1_54-REV CCACAGTTACTGATGCTTCTTCAC AAATATATATATGTGTCCAGTTTGT ATAATGCATTGTATTGCATAT 133919_5536530_ CGTTGCTGCTAAACACAGATGTAGG 120 404 KP212157.1-HPV16- ACATAATATTACCTGACCACCCGCA CNA138_1_56-REV TGAACTTCCCATACTTTATTTTT ACTATATTTTTCTGCATCATCTTTA AACTGCACAAAATATGTTCGTA 133919_5536530_ GATCTTGGTCGCTGGATAGTCGTCT 120 405 KP212157.1-HPV16- GTGTTTCTTCGGTGCCCAAGGCGAC CNA138_1_58-REV GGCTTTGGTATGGGTCGCGGC GGGGTGGTTGGCCAAGTGCTGCCTA ATAATTTCAGGAGAGGATACTTCG 133919_5536530_ ATTACAGTTAATCCGTCCTTTGTGT 120 406 KP212157.1-HPV16- GAGCTGTTAAATGCAGTGAGGATTG GAGCACTGTCCACTGAGTCTCT CNA138_1_60-REV GTGCAACAACTTAGTGGTGTGGCAG GGGTTTCCGGTGTCTGGCTCTGA 133919_5536530_ TCCAATGCCATGTAGACGACACTGC 120 407 KP212157.1-HPV16- AGTATACAATGTACAATGCTTTTTA CNA138_1_62-REV AATCTATATCTTAAACATTTTAAA GTATTAGCATCACCTTTTAAATGTA CTATGGGTGTAGTGTTACTAT 133919_5536530_ CCAGTAGACACTGTAATAGTTTTTG 120 408 KP212157.1-HPV16- GTATTTTAACTTGAGACAAAAATTG CNA138_1_64-REV GTCACGTTGCCATTCACTATCATA TGTAAGTGTAACAATTGCACTTTTA TGTTTTACATTATGTCCTGTC 133919_5536530_ CAGACAAAAGCAGCGGACGTATTAA 120 409 KP212157.1-HPV16- TAGGCAGACACACAAAAGCACACAA CNA138_1_66-REV AAGCAAAGCAAAAAGCACGCCA GTAATGTTGTGGATGCAGTATCAAG ATTTGTCATATAGACATAAATCC 133919_5536530_ TGTATTAAAAATAATGGTATATAAA 120 410 KP212157.1-HPV16- CAAATATAATATATACAATAAAACA CNA138_1_68-REV CCTAAACGCAGAGGCTGCTGTTAT CCACAATAGTAATACCAATATTATT AATGATGTGTATGTAGACACA 133919_5536530_ TAGTAAGTTATGGTATACAACAATT 86 411 KP212157.1-HPV16- ATATGTAACAATTACATTATGTACA CNA138_1_70-REV TATACATTATGTAATTAAAAAGCGT GCATGTGTATG 133919_5536531_ GGTATAATGTCAGGTGGACATGTAC 120 412 KP212157.1-HPV16- CTGCCTGTTTGCATGTTTTATAAAG CNA138_2_2-REV TTGGGTAGCCGATGCACGTTTT GTGCGTTTTGCAGAACGTTTGTGTC GCATTGTTAAGTGATAACAGTTT 133919_5536531_ GGAATATACCCAGTGCGTCCGCCTG 120 413 KP212157.1-HPV16- TACCCGACCCCGTTCCAATTCCTAA CNA138_2_4-REV CCCACCAAAAAATACACCCATA CTTCCATATTGTAATATTTGATCAG CAATAGTTTTGCCTTCAACCTTA 133919_5536531_ AAACTAGTTTCTTCCACTAAAGAAA 120 414 KP212157.1-HPV16- CTATAGAAGGATCAGAAGGGCCCAC CNA138_2_6-REV AGGATCTACTGTTAAAGGGGGT CTTACAGGAGCAAGTGTATCTGTAG CTGTGGGAGGCCTTGTTCCCAAT 133919_5536532_ GGAATTTCTTCATAATTATGTGTAC 120 415 KP212157.1-HPV16- TAATAGTGGATGATGAAAGTGTAAA CNA138_3_2-REV ATGCCCTCCAGTTTCTGCAGGTG TTGGAGGCTGCAATACAGATGGGTC AGTGAAAGTGGGATTATTATGT 133919_5536532_ ACTTTAACTTGTTGTGTTGTGCGAC 120 416 KP212157.1-HPV16- TATATAATCCTAGGCGTGCCACTGG CNA138_3_4-REV GCGAGACCCTGGTATGGGTGTG CTACTAGTTACTGTGTTAGGGTTTG TGCTAACAATAAATGTATCCATA 133919_5536532_ ATATTAATACTATTATCATTACTAG 120 417 KP212157.1-HPV16- AAAAATATAATGTATTATCCACATC CNA138_3_6-REV TATACCTTCATATGCAGGATTATCA TATGTAATAAGTTTAGTGGGAGTGG TTACAAAAGCAGGGTCTACA 133919_5536532_ CCACTACGAGTACGTAGTGTTTGTT 120 418 KP212157.1-HPV16- TATTACCAATTCTACTGTACCTAAT CNA138_3_8-REV GCCAGTACGCCTAGAGGTTAATG CTGGCCTATGTAAAGCAACTATATC CAAAAAGTCAGGATCTGGAGCT 133919_5536532_ GAGGCTGCATGTGAAGTGGTAGTAT 120 419 KP212157.1-HPV16- ATGTAGAAGGTGTTATAGTTTGTAA CNA138_3_10-REV TTCTATTTCTTCTGCAGGATCAA TAGTACTAAAATCATAATAATAATG TACCTTAGCACCTATAGATTTT 133919_5536532_ TTTGCAGGAATATAACCTGATAAAG 120 420 KP212157.1-HPV16- ATGTAGAGGGTACAGATGGTACCGG CNA138_3_12-REV GGTTGTAGAAGTATCTGTAATA AAGTCATCTGCATAAATATCATATA ATCCATTATTAATAGAAGTAGGT 133919_5536532_ TATTGTGGAGACCCTGGAACTATAG 120 421 KP212157.1-HPV16- GAATTAATGAAGGAGCTTGGTCAGT CNA138_3_14-REV TATATTAATGGGTATATCAGGAC CTGATACTAAAGGAATATTGTATGC ACCACCAAAAGGAATTGTTGTA 133919_5536532_ TGGCCTCACTAGGCAGCCAAAGAGA 120 422 KP212157.1-HPV16- CATCTGAAAAAAAATATGGTAAACG CNA138_3_16-REV TTTACGTCGTTTTCGTAACATGT AATAACTAGGATGTAAATAAAAGTC ACCTGCATCAGCAATAATTGTA 133919_5536532_ AATAGGGATGTCCAACTGCAAGTAG 120 423 KP212157.1-HPV16- TCTGGATGTTCCTGCATGATAATAT CNA138_3_18-REV ATGTTTGTGCGTGCAACATATTC ATCCGTGCTTACAACCTTAGATACT GGGACAGGAGGCAAGTAGACAG 133919_5536532_ ATGAGGTGTCAGGAAAACCAAACTT 120 424 KP212157.1-HPV16- ATTGGGGTCAGGTAAATGTATTCTA CNA138_3_20-REV AATACCCTGTATTGTAATCCTGA TACTTTAGGAACTAATATTTTGTTA TTGTTAGGTTTTTTAATAGGAA 133919_5536532_ CTGTGTCATCCAATTTATTTAATAA 120 425 KP212157.1-HPV16- AGGATGGCCACTAATGCCCACACCT CNA138_3_22-REV AATGGCTGACCACGACCTACCTC AACACCTACACAGGCCCAAACCAGC CGCTGTGTATCTGGATTATAAA 133919_5536532_ CCCAGTGTTCCCCTATAGGTGGTTT 120 426 KP212157.1-HPV16- GCAACCAATTAAACACAATTGTGTT CNA138_3_24-REV TGTTTGTAATCCATAGATATACAT TCTCTATTATCCACACCTGCATTTG CTGCATAAGCACTAGCATTTT 133919_5536532_ AGTCCATAGCACCAAAGCCAGTATC 120 427 KP212157.1-HPV16- AACCATATCACCATCCTGAATAACT CNA138_3_26-REV GTGTTTATTAACTCTAATGGTGG ACAATCACCTGGATTTACTGCAACA TTGGTACATGGGGATCCTTTGC 133919_5536532_ AATAAAAAAATAAGCTGTCGCCATA 120 428 KP212157.1-HPV16- TGGTTCTGACACCATTTTAATATAA CNA138_3_28-REV TCTGGATATTTGCAAATAGATGTA CAAATATCCAGTGGAACTTCACTTT TGTTAGCCTGTAATGTAGTAA 133919_5536532_ TGGAACTGGCTAAATTTGCAGTAGA 120 429 KP212157.1-HPV16- CCCAGAGCCTTTAATGTATAAATCG CNA138_3_30-REV TCTGGTACATTTTCACCAACAGT ACCAGCCCTATTAAATAAATGTCTA ACAAACATTTGTTCCCTTCGTA 133919_5536532_ ATAGTTGGTTACCCCAACAAATGCC 120 430 KP212157.1-HPV16- ATTATTGTGGCCCTGTGCTCGTTGT CNA138_3_32-REV AACCAATAAGGTTTATTGAATAT TTGGGCATCAGAGGTAACCATAGAA CCACTAGGTGTAGGAAAATAAT 133919_5536532_ ATTCCTCCCCATGTCGTAGGTACTC 120 431 KP212157.1-HPV16- CTTAAAGTTAGTATTTTTATATGTA CNA138_3_34-REV GTTTCTGAAGTAGATATGGCAGCA CATAATGACATATTTGTACTGCGTG TAGTATCAACAACAGTAACAA 133919_5536532_ GGGGAGGTTGTAGACCAAAATTCCA 120 432 KP212157.1-HPV16- GTCCTCCAAAATAGTGGAATTCATA CNA138_3_36-REV GAATGTATGTATGTCATAACGTC TGCAGTTAAGGTTATTTTGCACAGT TGAAAAATAAACTGTAAATCAT 133919_5536532_ TTACTTCCCAAAAAGTGTATTTTTT 120 433 KP212157.1-HPV16- AAGGGGATCTTCTTTAGGTGCTGGA CNA138_3_38-REV GGTGTATGTTTTTGACAAGCAATT GCCTGGGATGTTACAAACCTATAAG TATCTTCTAGTGTGCCTCCTG 133919_5536532_ TGGGTGTAGCTTTTCGTTTTCCTAA 120 434 KP212157.1-HPV16- TGTAAATTTTGGTTTGGCCTTCAAT CNA138_3_40-REV CCTGCTTGTAGTAAAAATTTGCGT CCTAAAGGAAACTGATCTAGGTCTG CAGAAAACTTTTCCTTTAAAT 133919_5536533_ GATGTAGCAAATATAGTTTATATAC 114 435 KP212157.1-HPV16- AATGAATAACCACAACACAATTAGT CNA138_4_2-REV AGGTGTTGAAACAATAAGTTTATT TATGTTGCATGACACAATAGTTACA CAAGCATTTAAAAAC 133919_5536533_ CTATTTAAAAAAACACATTTTGTGC 120 436 KP212157.1-HPV16- CAAAAAGCTTGCAACCGAATTCGGT CNA138_4_4-REV TGAAGCTACAAAATGGCCGCTGG CGCTACAAAATATAGTATATATAAA ACAAAAACAGGATGTAGCAAAT 133919_5536533_ AAAAAACAATGGAATGGTTGGCAAG 120 437 KP212157.1-HPV16- CAGTGCAGGTCAGGAAAACAGGGAT CNA138_4_6-REV TTGGCACGCATGGCAAGCAGG AAACGTACAAGTTTAAACCATAGTT GCTGACATAGAACTATTTAAAAAA 133919_5536533_ AGCCAAAAATATGTGCCTAACAGCG 120 438 KP212157.1-HPV16- GTATGTAAGGCGTTGGCGCATAGTG CNA138_4_8-REV ATTTATTTTATATGACACAATGT ACATAGTGATTCAGTAGTTGCACAT AGTGCAGTGTAAAAAACAATGG 133919_5536533_ CAATGTATGACTAACCTTTACACAG 120 439 KP212157.1-HPV16- TTCATGTATAAACTAGGGTGACATT CNA138_4_10-REV TAGTTGGCCTTAGAAGTTTAAAC CTTATGCCAAATATGCAATTAGGTT AGTTAAAACAAGCCAAAAATAT

HPV18_DoubleStrand_ SEQ SequenceName Sequence Length ID#: 625339_25353837_60975_ CCTCAAAGCGCGCCATAGTATTGTG 120 440 HPV18REF.1_1_1 GTGTGTTTCTCACATCTTTTATATA CACCGTTTTCGGTCCCGACCGTTTT CGGTTACTC CCTTTTTTATATACTACAATTGTTA AAAGTATTAAT 625339_25353837_60975_ GAAAACGGTGTATATAAAAGATGTG 120 441 HPV18REF.1_1_2 AGAAACACACCACAATACTATGGCG CGCTTTGAGGATCCAACACGGCGAC CCTACAAG CTACCTGATCTGTGCACGGAACTGA ACACTTCACTGC 625339_25353837_60975_ CAAATACCTCTGTAAGTTCCAATAC 120 442 HPV18REF.1_1_3 TGTCTTGCAATATACACAGGTTATT TCTATGTCTTGCAGTGAAGTGTTCA GTTCCGTGCA CAGATCAGGTAGCTTGTAGGGTCGC CGTGTTGGAT 625339_25353837_60975_ AAGACATAGAAATAACCTGTGTATA 120 443 HPV18REF.1_1_4 TTGCAAGACAGTATTGGAACTTACA GAGGTATTTGAATTTGCATTTAAAG ATTTATTTGT GGTGTATAGAGACAGTATACCGCAT GCTGCATGCC 625339_25353837_60975_ ACACAGAGTCTGAATAATGTCTTAA 120 444 HPV18REF.1_1_5 TTCTCTAATTCTAGAATAAAAATCT ATACATTTATGGCATGCAGCATGCG GTATACTGTC TCTATACACCACAAATAAATCTTTA AATGCAAATT 625339_25353837_60975_ ATAAATGTATAGATTTTTATTCTAG 120 445 HPV18REF.1_1_6 AATTAGAGAATTAAGACATTATTCA GACTCTGTGTATGGAGACACATTGG AAAAACTAACT AACACTGGGTTATACAATTTATTAA TAAGGTGCC 625339_25353837_60975_ GTCGTTTTTCATTAAGGTGTCTAAG 120 446 HPV18REF.1_1_7 TTTTTCTGCTGGATTCAACGGTTTC TGGCACCGCAGGCACCTTATTAATA AATTGTATAA CCCAGTGTTAGTTAGTTTTTCCAAT GTGTCTCCAT 625339_25353837_60975_ TGCGGTGCCAGAAACCGTTGAATCC 120 447 HPV18REF.1_1_8 AGCAGAAAAACTTAGACACCTTAAT GAAAAACGACGATTTCACAACATAG CTGGGCACT ATAGAGGCCAGTGCCATTCGTGCTG CAACCGAGCAC 625339_25353837_60975_ GGTCCATGCATACTTAATATTATAC 120 448 HPV18REF.1_1_9 TTGTGTTTCTCTGCGTCGTTGGAGT CGTTCCTGTCGTGCTCGGTTGCAGC ACGAATGG CACTGGCCTCTATAGTGCCCAGCTA TGTTGTGAAATC 625339_25353837_60975_ GACAGGAACGACTCCAACGACGCAG 120 449 HPV18REF.1_1_10 AGAAACACAAGTATAATATTAAGTA TGCATGGACCTAAGGCAACATTGCA AGACATTGT ATTGCATTTAGAGCCCCAAAATGAA ATTCCGGTTGA 625339_25353837_60975_ ACTCCATCTATTTCATCGTTTTCTT 120 450 HPV18REF.1_1_11 CCTCTGAGTCGCTTAATTGCTCGTG ACATAGAAGGTCAACCGGAATTTCA TTTTGGGGCT CTAAATGCAATACAATGTCTTGCAA TGTTGCCTTA 625339_25353837_60975_ CCTTCTATGTCACGAGCAATTAAGC 120 451 HPV18REF.1_1_12 GACTCAGAGGAAGAAAACGATGAAA TAGATGGAGTTAATCATCAACATTT ACCAGCCCG ACGAGCCGAACCACAACGTCACACA ATGTTGTGTAT 625339_25353837_60975_ CGAAGGTCGTCTGCTGAGCTTTCTA 120 452 HPV18REF.1_1_13 CTACTAGCTCAATTCTGGCTTCACA CTTACAACACATACACAACATTGTG TGACGTTGT GGTTCGGCTCGTCGGGCTGGTAAAT GTTGATGATTA 625339_25353837_60975_ GTGTTGTAAGTGTGAAGCCAGAATT 120 453 HPV18REF.1_1_14 GAGCTAGTAGTAGAAAGCTCAGCAG ACGACCTTCGAGCATTCCAGCAGCT GTTTCTGA ACACCCTGTCCTTTGTGTGTCCGTG GTGTGCATCCCA 625339_25353837_60975_ CCGTTACAACCCGTGCCCTCCCCGT 120 454 HPV18REF.1_1_15 CTGTACCTTCTGGATCAGCCATTGT TGCTTACTGCTGGGATGCACACCAC GGACACAC AAAGGACAGGGTGTTCAGAAACAGC TGCTGGAATGCT 625339_25353837_60975_ GCAGTAAGCAACAATGGCTGATCCA 120 455 HPV18REF.1_1_16 GAAGGTACAGACGGGGAGGGCACGG GTTGTAACGGCTGGTTTTATGTACA AGCTATT GTAGACAAAAAAACAGGAGATGTAA TATCAGATGACGA 625339_25353837_60975_ GTTCCTTGTGTATCAATAAAATCTA 120 456 HPV18REF.1_1_17 CCATATCCGACCCTGTGTCTGTTGC ATTTTCGTCCTCGTCATCTGATATT ACATCTCCTG TTTTTTTGTCTACAATAGCTTGTAC ATAAAACCAG 625339_25353837_60975_ GGACGAAAATGCAACAGACACAGGG 120 457 HPV18REF.1_1_18 TCGGATATGGTAGATTTTATTGATA CACAAGGAACATTTTGTGAACAGGC AGAGCTAG AGACAGCACAGGCATTGTTCCATGC GCAGGAGGTCCA 625339_25353837_60975_ TTTTCTGTGCTGCCTCCTGCAAACT 120 458 HPV18REF.1_1_19 TTCGTTTTAAAACATGCAACACTTG TGCATCATTGTGGACCTCCTGCGCA TGGAACAAT GCCTGTGCTGTCTCTAGCTCTGCCT GTTCACAAAAT 625339_25353837_60975_ CAATGATGCACAAGTGTTGCATGTT 120 459 HPV18REF.1_1_20 TTAAAACGAAAGTTTGCAGGAGGCA GCACAGAAAACAGTCCATTAGGGGA GCGGCTGG AGGTGGATACAGAGTTAAGTCCACG GTTACAAGAAAT 625339_25353837_60975_ CCACTATCTGATATTGTAAACAGCC 120 460 HPV18REF.1_1_21 GCCTTTTTGCCTTTTTCTGCCCACT ATTTAAAGATATTTCTTGTAACCGT GGACTTAACT CTGTATCCACCTCCAGCCGCTCCCC TAATGGACTG 625339_25353837_60975_ ATCTTTAAATAGTGGGCAGAAAAAG 120 461 HPV18REF.1_1_22 GCAAAAAGGCGGCTGTTTACAATAT CAGATAGTGGCTATGGCTGTTCTGA AGTGGAAG CAACACAGATTCAGGTAACTACAAA TGGCGAACATGG 625339_25353837_60975_ TTGCCCTCTGTGCCCCCGTTGTCTA 120 462 HPV18REF.1_1_23 TAGCCTCCGTACTGCCGCCACTACA TACATTGCCGCCATGTTCGCCATTT GTAGTTACC TGAATCTGTGTTGCTTCCACTTCAG AACAGCCATAG 625339_25353837_60975_ CGGCAATGTATGTAGTGGCGGCAGT 120 463 HPV18REF.1_1_24 ACGGAGGCTATAGACAACGGGGGCA CAGAGGGCAACAACAGCAGTGTAGA CGGTAC AAGTGACAATAGCAATATAGAAAAT GTAAATCCACAATG 62533925353837_60975_ GCTAACATAGCTCCTTGTTTATTGT 120 464 HPV18REF.1_1_25 TTACTTTTAACAAGTCTTTTAATTG TGCTATGGTACATTGTGGATTTACA TTTTCTATATT GCTATTGTCACTTGTACCGTCTACA CTGCTGTTG 625339_25353837_60975_ TACCATAGCACAATTAAAAGACTTG 120 465 HPV18REF.1_1_26 TTAAAAGTAAACAATAAACAAGGAG CTATGTTAGCAGTATTTAAAGACAC ATATGGGCTA TCATTTACAGATTTAGTTAGAAATT TTAAAAGTGA 625339_25353837_60975_ TCTGCTATTGTTGGGTTTACTCCAA 120 466 HPV18REF.1_1_27 ATATAGCTGTAACCCAATCTGTACA CGTGGTTTTATCACTTTTAAAATTT CTAACTAAATC TGTAAATGATAGCCCATATGTGTCT TTAAATACT 625339_25353837_60975_ TAAAACCACGTGTACAGATTGGGTT 120 467 HPV18REF.1_1_28 ACAGCTATATTTGGAGTAAACCCAA CAATAGCAGAAGGATTTAAAACACT AATACAGCC ATTTATATTATATGCCCATATTCAA TGTCTAGACTG 625339_25353837_60975_ GTTAGTCTACTCTTACCACATTTGT 120 468 HPV18REF.1_1_29 AACGCAACAGGGCTAATATTAATAC TCCCCATTTACAGTCTAGACATTGA ATATGGGCAT ATAATATAAATGGCTGTATTAGTGT TTTAAATCCT 625339_25353837_60975_ TAAATGGGGAGTATTAATATTAGCC 120 469 HPV18REF.1_1_30 CTGTTGCGTTACAAATGTGGTAAGA GTAGACTAACAGTTGCTAAAGGTTT AAGTACGTT GTTACACGTACCTGAAACTTGTATG TTAATTCAACC 625339_25353837_60975_ ATATTTGATATTCCTGTTCTATACC 120 470 HPV18REF.1_1_31 AATATAGTGCTGCAACACTACTTCG CAATTTTGGTGGTTGAATTAACATA CAAGTTTCAG GTACGTGTAACAACGTACTTAAACC TTTAGCAACT 625339_25353837_60975_ ACCAAAATTGCGAAGTAGTGTTGCA 120 471 HPV18REF.1_1_32 GCACTATATTGGTATAGAACAGGAA TATCAAATATTAGTGAAGTAATGGG AGACACACC TGAGTGGATACAAAGACTTACTATT ATACAACATGG 625339_25353837_60975_ AGCTCATTATCAAATGCCCATTGTA 120 472 HPV18REF.1_1_33 CCATTTCTGACAAATCAAAATTGCT ATCATCTATTCCATGTTGTATAATA GTAAGTCTTTG TATCCACTCAGGTGTGTCTCCCATT ACTTCACTA 625339_25353837_60975_ AATAGATGATAGCAATTTTGATTTG 120 473 HPV18REF.1_1_34 TCAGAAATGGTACAATGGGCATTTG ATAATGAGCTGACAGATGAAAGCGA TATGGCATT TGAATATGCCTTATTAGCAGACAGC AACAGCAATGC 625339_25353837_60975_ CACATTGTGGCACAATCTTTTAAAT 120 474 HPV18REF.1_1_35 ATTTAGCTTGGCAATTGCTTTTTAA AAAGGCAGCTGCATTGCTGTTGCTG TCTGCTAATA AGGCATATTCAAATGCCATATCGCT TTCATCTGTC 625339_25353837_60975_ AGCTGCCTTTTTAAAAAGCAATTGC 120 475 HPV18REF.1_1_36 CAAGCTAAATATTTAAAAGATTGTG CCACAATGTGCAAACATTATAGGCG AGCCCAAAAA CGACAAATGAATATGTCACAGTGGA TACGATTTAG 625339_25353837_60975_ TGGTATCGCAGGAATTGCACTATTG 120 476 HPV18REF.1_1_37 GTCTCCAATCTCCCCCTTCATCTAT TTTTGAACATCTAAATCGTATCCAC TGTGACATAT TCATTTGTCGTTTTTGGGCTCGCCT ATAATGTTTG 625339_25353837_60975_ ATGTTCAAAAATAGATGAAGGGGGA 120 477 HPV18REF.1_1_38 GATTGGAGACCAATAGTGCAATTCC TGCGATACCAACAAATAGAGTTTAT AACATTTTT AGGAGCCTTAAAATCATTTTTAAAA GGAACCCCCAA 625339_25353837_60975_ ClCATTCCAAAATATGATTTTCCTG 120 478 HPV18REF.1_1_39 TATTTGCTGGTCCACAAAATACTAA ACAATTTTTTTTGGGGGTTCCTTTT AAAAATGATTT TAAGGCTCCTAAAAATGTTATAAAC TCTATTTGT 625339_25353837_60975_ AAAAAATTGTTTAGTATTTTGTGGA 120 479 HPV18REF.1_1_40 CCAGCAAATACAGGAAAATCATATT TTGGAATGAGTTTTATACACTTTAT ACAAGGAGCA GTAATATCATTTGTGAATTCCACTA GTCATTTTTG 625339_25353837_60975_ CAACACGTGGTCGTTGCATCATCTA 120 480 HPV18REF.1_1_41 ACATGGCCACCTTAGTATCTGTTAA CGGTTCCAACCAAAAATGACTAGTG GAATTCACA AATGATATTACTGCTCCTTGTATAA AGTGTATAAAA 625339_25353837_60975_ GTTGGAACCGTTAACAGATACTAAG 120 481 HPV18REF.1_1_42 GTGGCCATGTTAGATGATGCAACGA CCACGTGTTGGACATACTTTGATAC CTATATGAG AAATGCGTTAGATGGCAATCCAATA AGTATTGATAG 625339_25353837_60975_ TGTATATTTGTGGTTAGTAGTATTG 120 482 HPV18REF.1_1_43 GAGGACATTTTAGTTGTATTAATGG TTTGTGCTTTCTATCAATACTTATT GGATTGCCAT CTAACGCATTTCTCATATAGGTATC AAAGTATGTC 625339_25353837_60975_ AAAGCACAAACCATTAATACAACTA 120 483 HPV18REF.1_1_44 AAATGTCCTCCAATACTACTAACCA CAAATATACATCCAGCAAAGGATAA TAGATGGCCA TATTTAGAAAGTAGAATAACAGTAT TTGAATTTCC 625339_25353837_60975_ CAATTTTTGTCATTTATTTCATATA 120 484 HPV18REF.1_1_45 CTGGATTGCCATTTTTATCAAATGG AAATGCATTTGGAAATTCAAATACT GTTATTCTACTT TCTAAATATGGCCATCTATTATCCT TTGCTGGA 625339_25353837_60975_ AAATGCATTTCCATTTGATAAAAAT 120 485 HPV18REF.1_1_46 GGCAATCCAGTATATGAAATAAATG ACAAAAATTGGAAATGTTTTTTTGA AAGGACATGG TCCAGATTAGATTTGCACGAGGAAG AGGAAGATGC 625339_25353837_60975_ GGTCTATGATTTTGTCCTGCAACGC 120 486 HPV18REF.1_1_47 ACTTAAACGTTCCGAAAGGGTTTCC TTCGGTGTCTGCATCTTCCTCTTCC TCGTGCAAA TCTAATCTGGACCATGTCCTTTCAA AAAAACATTTC 625339_25353837_60975_ AGACACCGAAGGAAACCCTTTCGGA 120 487 HPV18REF.1_1_48 ACGTTTAAGTGCGTTGCAGGACAAA ATCATAGACCACTATGAAAATGACA GTAAAGACA TAGACAGCCAAATACAGTATTGGCA ACTAATACGTT 625339_25353837_60975_ CCTGGTGGTTTAATGTCTGTATGCC 120 488 HPV18REF.1_1_49 ATGTTCCCTTGCTGCAAAGAATATT GCATTTTCCCAACGTATTAGTTGCC AATACTGTAT TTGGCTGTCTATGTCTTTACTGTCA TTTTCATAGT 625339_25353837_60975_ GGGAAAATGCAATATTCTTTGCAGC 120 489 HPV18REF.1_1_50 AAGGGAACATGGCATACAGACATTA AACCACCAGGTGGTGCCAGCCTATA ACATTTCAA AAAGTAAAGCACATAAAGCTATTGA ACTGCAAATGG 625339_25353837_60975_ ATGTGTCTTGCAGTGTCCAATCCTC 120 490 HPV18REF.1_1_51 GGTTTTGTATGCACTTTGTGCAAGG CCTTGTAGGGCCATTTGCAGTTCAA TAGCTTTAT GTGCTTTACTTTTTGAAATGTTATA GGCTGGCACCA 625339_25353837_60975_ CCCTACAAGGCCTTGCACAAAGTGC 120 491 HPV18REF.1_1_52 ATACAAAACCGAGGATTGGACACTG CAAGACACATGCGAGGAACTATGGA ATACAGAA CCTACTCACTGCTTTAAAAAAGGTG GCCAAACAGTAC 625339_25353837_60975_ ACACACTGTCCCATGCTACATAGGT 120 492 HPV18REF.1_1_53 CATACAATTGTCTTTGTTGCCATCA AAATATACTTGTACTGTTTGGCCAC CTTTTTTAAA GCAGTGAGTAGGTTCTGTATTCCAT AGTTCCTCGC 625339_25353837_60975_ AAGTATATTTTGATGGCAACAAAGA 120 493 HPV18REF.1_1_54 CAATTGTATGACCTATGTAGCATGG GACAGTGTGTATTATATGACTGATG CAGGAACAT GGGACAAAACGGCTACCTGTGTAAG TCACAGGGGAT 625339_25353837_60975_ TTTCACATTCACTTTTAAATTCTAT 120 494 HPV18REF.1_1_55 ATAAAACGTGTTGTACCCTTCCTTT ACATAATACAATCCCCTGTGACTTA CACAGGTAGCC GTTTTGTCCCATGTTCCTGCATCAG TCATATAAT 625339_25353837_60975_ TGTATTATGTAAAGGAAGGGTACAA 120 495 HPV18REF.1_1_56 CACGTTTTATATAGAATTTAAAAGT GAATGTGAAAAATATGGGAACACAG GTACGTGGG AAGTACATTTTGGGAATAATGTAAT TGATTGTAATG 625339_25353837_60975_ GTAGCTGTTTAACAAGCTGAGTAGC 120 496 HPV18REF.1_1_57 GGATACCGTGTCGTCACTGGTACTG CACATAGAGTCATTACAATCAATTA CATTATTCC CAAAATGTACTTCCCACGTACCTGT GTTCCCATATT 625339_25353837_60975_ ACTCTATGTGCAGTACCAGTGACGA 120 497 HPV18REF.1_1_58 CACGGTATCCGCTACTCAGCTTGTT AAACAGCTACAGCACACCCCCTCAC CGTATTCCA GCACCGTGTCCGTGGGCACCGCAAA GACCTACGGCC 625339_25353837_60975_ GTCCACAATGCTGCTTCTCCGCGAG 120 498 HPV18REF.1_1_59 TCCACAGTGTCCAGGTCGTGTAGCA GCCGACGTCTGGCCGTAGGTCTTTG CGGTGCC CACGGACACGGTGCTGGAATACGGT GAGGGGGTGTGCT 625339_25353837_60975_ AGACGTCGGCTGCTACACGACCTGG 120 499 HPV18REF.1_1_60 ACACTGTGGACTCGCGGAGAAGCAG CATTGTGGACCTGTCAACCCACTTC TCGGTGC AGCTACACCTACAGGCAACAACAAA AGACGGAAACTCT 625339_25353837_60975_ AACATTTTAAACTGTTTCTGTCACC 120 500 HPV18REF.1_1_61 TTTTAAATGTATTATAGGCGTAGTG TTACCACTACAGAGTTTCCGTCTTT TGTTGTTGCC TGTAGGTGTAGCTGCACCGAGAAGT GGGTTGACAG 625339_25353837_60975_ GTAGTGGTAACACTACGCCTATAAT 120 501 HPV18REF.1_1_62 ACATTTAAAAGGTGACAGAAACAGT TTAAAATGTTTACGGTACAGATTGC GAAAACATA GCGACCACTATAGAGATATATCATC CACCTGGCATT 625339_25353837_60975_ GTGTTTCACTATGGTATGTTACAGT 120 502 HPV18REF.1_1_63 CAGTATTCCTGTTTTTTCATTGCCT GCACCTGTCCAATGCCAGGTGGATG ATATATCTCT ATAGTGGTCGCTATGTTTTCGCAAT CTGTACCGTA 625339_25353837_60975_ GGACAGGTGCAGGCAATGAAAAAAC 120 503 HPV18REF.1_1_64 AGGAATACTGACTGTAACATACCAT AGTGAAACACAAAGAACAAAATTTT TAAATACTG TTGCAATTCCAGATAGTGTACAAAT ATTGGTGGGAT 625339_25353837_60975_ AAAATAAAAAAATAAGTGATAACAT 120 504 HPV18REF.1_1_65 ATTGGTACTACAGCATATGTATTAC ATTGTCATGTATCCCACCAATATTT GTACACTATCT GGAATTGCAACAGTATTTAAAAATT TTGTTCTTT 625339_25353837_60975_ ACATGACAATGTAATACATATGCTG 120 505 HPV18REF.1_1_66 TAGTACCAATATGTTATCACTTATT TTTTTATTTTGCTTTTGTGTATGCA TGTATGTGTGC TGCCATGTCCCGCTTTTGCCATCTG TCTGTATGT 625339_25353837_60975_ CTGTGGCAGGGGACGTTATTACCAC 120 506 HPV18REF.1_1_67 AATATACACAAATACCAATACCCAT GCATACGCACACATACAGACAGATG GCAAAAGC GGGACATGGCAGCACACATACATGC ATACACAAAAGC 625339_25353837_60975_ GTGCGTATGCATGGGTATTGGTATT 120 507 HPV18REF.1_1_68 TGTGTATATTGTGGTAATAACGTCC CCTGCCACAGCATTCACAGTATATG TATTTTGTT TTTTATTGCCCATGTTACTATTGCA TATACATGCTA 625339_25353837_60975_ AAATATACAATGTACAATACACTGT 120 508 HPV18REF.1_1_69 ATAAAACAACCTATACAATTACTGT AAAGACAATATAGCATGTATATGCA ATAGTAACATG GGCAATAAAAAACAAAATACATATA CTGTGAATG 625339_25353837_60975_ TATTGTCTTTACAGTAATTGTATAG 120 509 HPV18REF.1_1_70 GTTGTTTTATACAGTGTATTGTACA TTGTATATTTTGTTTTATACCTTTT ATGCTTTTTGTA TTTTTGTAATAAAAGTATGGTATCC CACCGTGC 625339_25353837_60975_ GTACCAGATTGTTTACATGTTTTAT 120 510 HPV18REF.1_1_71 ATAAGTCAGTTACCGAAGCCCGTTT GCGTCGTGCGGCACGGTGGGATACC ATACTTTTA TTACAAAAATACAAAAAGCATAAAA GGTATAAAACA 625339_25353837_60975_ CGCACGACGCAAACGGGCTTCGGTA 120 511 HPV18REF.1_1_72 ACTGACTTATATAAAACATGTAAAC AATCTGGTACATGTCCACCTGATGT TGTTCCTAA GGTGGAGGGCACCACGTTAGCAGAT AAAATATTGCA 625339_25353837_60975_ CCTGTACCACTGCCAGTACCTATGC 120 512 HPV18REF.1_1_73 CAAGTCCACCCAAAAATATACCAAG GCTTGACCATTGCAATATTTTATCT GCTAACGTG GTGCCCTCCACCTTAGGAACAACAT CAGGTGGACAT 625339_25353837_60975_ ATGGTCAAGCCTTGGTATATTTTTG 120 513 HPV18REF.1_1_74 GGTGGACTTGGCATAGGTACTGGCA GTGGTACAGGGGGTCGTACAGGGTA CATTCCAT TGGGTGGGCGTTCCAATACAGTGGT GGATGTTGGTCC 625339_25353837_60975_ AATGTAACAATAGATGGGTCTGTGG 120 514 HPV18REF.1_1_75 GGCCCACAGGTTCAATAACCACTGG GGGACGTGTAGGACCAACATCCACC ACTGTATT GGAACGCCCACCCAATGGAATGTAC CCTGTACGACCC 625339_25353837_60975_ TACACGTCCCCCAGTGGTTATTGAA 120 515 HPV18REF.1_1_76 CCTGTGGGCCCCACAGACCCATCTA TTGTTACATTAATAGAGGACTCCAG TGTGGTTAC ATCAGGTGCACCTAGGCCTACGTTT ACTGGCACGTC 625339_25353837_60975_ GAAGGTGTGATATCCAAAACCGCAG 120 516 HPV18REF.1_1_77 GTGTAGTTGTACCCGCAGATGTTAT ATCAAACCCAGACGTGCCAGTAAAC GTAGGCCT AGGTGCACCTGATGTAACCACACTG GAGTCCTCTATT 625339_25353837_60975_ TGGGTTTGATATAACATCTGCGGGT 120 517 HPV18REF.1_1_78 ACAACTACACCTGCGGTTTTGGATA TCACACCTTCGTCTACCTCTGTGTC TATTTCCAC AACCAATTTTACCAATCCTGCATTT TCTGATCCGTC 625339_25353837_60975_ GTAGGGGTACCAACAAATACATTAC 120 518 HPV18REF.1_1_79 CTGCCACCTCCCCAGTTTGTGGAAC TTCAATAATGGACGGATCAGAAAAT GCAGGATT GGTAAAATTGGTTGTGGAAATAGAC ACAGAGGTAGAC 625339_25353837_60975_ CATTATTGAAGTTCCACAAACTGGG 120 519 HPV18REF.1_1_80 GAGGTGGCAGGTAATGTATTTGTTG GTACCCCTACATCTGGAACACATGG GTATGAGG AAATACCTTTACAAACATTTGCTTC TTCTGGTACGGG 625339_25353837_60975_ AGGCGGGGACCTGCTACACGCCGCA 120 520 HPV18REF.1_1_81 CAGTAGGCAATGGGGTACTACTAAT GGGTTCCTCCCCCGTACCAGAAGAA GCAAATG TTTGTAAAGGTATTTCCTCATACCC ATGTGTTCCAGAT 625339_25353837_60975_ GGAGGAACCCATTAGTAGTACCCCA 120 521 HPV18REF.1_1_82 TTGCCTACTGTGCGGCGTGTAGCAG GTCCCCGCCTTTACAGTAGGGCCTA CCAACAA GTGTCAGTGGCTAACCCTGAGTTTC TTACACGTCCATC 625339_25353837_60975_ TCAAATGTTAATGTAGTGTCCACAG 120 522 HPV18REF.1_1_83 GCTCAAAGGCCGGGTTGTCATATGT AATTAAAGAGGATGGACGTGTAAGA AACTCAGG GTTAGCCACTGACACTTGTTGGTAG GCCCTACTGTAA 625339_25353837_60975_ CTCTTTAATTACATATGACAACCCG 120 523 HPV18REF.1_1_84 GCCTTTGAGCCTGTGGACACTACAT TAACATTTGATCCTCGTAGTGATGT TCCTGATTCA GATTTTATGGATATTATCCGTCTAC ATAGGCCTGC 625339_25353837_60975_ AACATAGTTGCCCGTTGACCTAATC 120 524 HPV18REF.1_1_85 TACTAAAGCGAACAGTCCCACGCCT GGATGTTAAAGCAGGCCTATGTAGA CGGATAATA TCCATAAAATCTGAATCAGGAACAT CACTACGAGGA 625339_25353837_60975_ TTTAACATCCAGGCGTGGGACTGTT 120 525 HPV18REF.1_1_86 CGCTTTAGTAGATTAGGTCAACGGG CAACTATGTTTACCCGCAGCGGTAC ACAAATAG GTGCTAGGGTTCACTTTTATCATGA TATAAGTCCTAT 625339_25353837_60975_ TCATTGTCCTCCGTGGCAGATACTA 120 526 HPV18REF.1_1_87 AAGGCTGCAGTTCAATATATTCTGG GGAAGGTGCAATAGGACTTATATCA TGATAAAAG TGAACCCTAGCACCTATTTGTGTAC CGCTGCGGGTA 625339_25353837_60975_ TGCACCTTCCCCAGAATATATTGAA 120 527 HPV18REF.1_1_88 CTGCAGCCTTTAGTATCTGCCACGG AGGACAATGACTTGTTTGATATATA TGCAGATGA CATGGACCCTGCAGTGCCTGTACCA TCGCGTTCTAC 625339_25353837_60975_ TTACTATAGGAAGAGGCAGAAGATA 120 528 HPV18REF.1_1_89 TAGTGGGCGAATATTTAAAAAATGC AAAGGAGGTAGTAGAACGCGATGGT ACAGGCAC TGCAGGGTCCATGTCATCTGCATAT ATATCAAACAAG 625339_25353837_60975_ TACCTCCTTTGCATTlliTAAATAT 120 529 HPV18REF.1_1_90 TCGCCCACTATATCTTCTGCCTCTT CCTATAGTAATGTAACGGTCCCTTT AACCTCCTCTT GGGATGTGCCTGTATACACGGGTCC TGATATTAC 625339_25353837_60975_ TGTGTAGAGGCAGGGGCCGTGGGTG 120 530 HPV18REF.1_1_91 ATACAATGGGCCATACAGAGGTAGT AGATGGTAATGTAATATCAGGACCC GTGTATA CAGGCACATCCCAAGAGGAGGTTAA AGGGACCGTTACA 625339_25353837_60975_ ATTACCATCTACTACCTCTGTATGG 120 531 HPV18REF.1_1_92 CCCATTGTATCACCCACGGCCCCTG CCTCTACACAGTATATTGGTATACA TGGTACACA TTATTATTTGTGGCCATTATATTAT TTTATTCCTAA 625339_25353837_60975_ TATTGTCACTAGGCCGCCACAAAGC 120 532 HPV18REF.1_1_93 CATCTGCAAAAAAATAGGGAACACG TTTACGTTTCTTAGGAATAAAATAA TATAATGGC CACAAATAATAATGTGTACCATGTA TACCAATATAC 625339_25353837_60975_ GAAACGTAAACGTGTTCCCTATTTT 120 533 HPV18REF.1_1_94 TTTGCAGATGGCTTTGTGGCGGCCT AGTGACAATACCGTATATCTTCCAC CTCCTTCTG TGGCAAGAGTTGTAAATACCGATGA TTATGTGACTC 625339_25353837_60975_ AATATGGATTACCAACAGTTAATAA 120 534 HPV18REF.1_1_95 TCTAGAGCTGCCAGCATGATAAAAT ATGCTTGTGCGAGTCACATAATCAT CGGTATTTAC AACTCTTGCCACAGAAGGAGGTGGA AGATATACGG 625339_25353837_60975_ GCACAAGCATATTTTATCATGCTGG 120 535 HPV18REF.1_1_96 CAGCTCTAGATTATTAACTGTTGGT AATCCATATTTTAGGGTTCCTGCAG GTGGTGGCA ATAAGCAGGATATTCCTAAGGTTTC TGCATACCAAT 625339_25353837_60975_ TACTAGTATCAGGTAAACCAAATTT 120 536 HPV18REF.1_1_97 ATTTGGGTCAGGTAACTGCACCCTA AATACTCTATATTGGTATGCAGAAA CCTTAGGAAT ATCCTGCTTATTGCCACCACCTGCA GGAACCCTAA 625339_25353837_60975_ ATAGAGTATTTAGGGTGCAGTTACC 120 537 HPV18REF.1_1_98 TGACCCAAATAAATTTGGTTTACCT GATACTAGTATTTATAATCCTGAAA CACAACGTTT AGTGTGGGCCTGTGCTGGAGTGGAA ATTGGCCGTG 625339_25353837_60975_ CAGTGTCATCTAATTTATTATAAAA 120 538 HPV18REF.1_1_99 TGGATGCCCACTAAGGCCAACACCT AAAGGCTGACCACGGCCAATTTCCA CTCCAGCAC AGGCCCACACTAAACGTTGTGTTTC AGGATTATAAA 625339_25353837_60975_ GTCAGCCTTTAGGTGTTGGCCTTAG 120 539 HPV18REF.1_1_100 TGGGCATCCATTTTATAATAAATTA GATGACACTGAAAGTTCCCATGCCG CCACGTCTA ATGTTTCTGAGGACGTTAGGGACAA TGTGTCTGTAG 625339_25353837_60975_ CCCAGTGTTCCCCAATAGCAGGGGC 120 540 HPV18REF.1_1_101 ACAGCCCAAAATACATAACTGTGTC TGCTTATAATCTACAGACACATTGT CCCTAACGT CCTCAGAAACATTAGACGTGGCGGC ATGGGAACTTT 625339_25353837_60975_ ATTATAAGCAGACACAGTTATGTAT 120 541 HPV18REF.1_1_102 TTTGGGCTGTGCCCCTGCTATTGGG GAACACTGGGCTAAAGGCACTGCTT GTAAATCG CGTCCTTTATCACAGGGCGATTGCC CCCCTTTAGAAC 625339_25353837_60975_ AGTCCATGGCACCATATCCAGTATC 120 542 HPV18REF.1_1_103 TACCATATCACCATCTTCCAAAACT GTGTTTTTAAGTTCTAAAGGGGGGC AATCGCCCT GTGATAAAGGACGCGATTTACAAGC AGTGCCTTTAG 625339_25353837_60975_ TTAAAAACACAGTTTTGGAAGATGG 120 543 HPV18REF.1_1_104 TGATATGGTAGATACTGGATATGGT GCCATGGACTTTAGTACATTGCAAG ATACTAAAT GTGAGGTACCATTGGATATTTGTCA GTCTATTTGTA 625339_25353837_60975_ AGCAAAAAAACATGGAATCCCCATA 120 544 HPV18REF.1_1_105 AGGATCTGCAGACATTTGTAAATAA TCAGGATATTTACAAATAGACTGAC AAATATCCAA TGGTACCTCACATTTAGTATCTTGC AATGTACTAA 625339_25353837_60975_ AATATCCTGATTATlTACAAATGTC 120 545 HPV18REF.1_1_106 TGCAGATCCTTATGGGGATTCCATG TTTTTTTGCTTACGGCGTGAGCAGC TTTTTGCTAG GCATTTTTGGAATAGAGCAGGTACT ATGGGTGACA 625339_25353837_60975_ CACAGCTGCCAGGTGAAGCACGCAT 120 546 HPV18REF.1_1_107 ACCTGTGCCTTTAATATATAAGGAT TGAGGCACAGTGTCACCCATAGTAC CTGCTCTA TTCCAAAAATGCCTAGCAAAAAGCT GCTCACGCCGTA 625339_25353837_60975_ CTGTGCCTCAATCCTTATATATTAA 120 547 HPV18REF.1_1_108 AGGCACAGGTATGCGTGCTTCACCT GGCAGCTGTGTGTATTCTCCCTCTC CAAGTGGCT CTATTGTTACCTCTGACTCCCAGTT GTTTAATAAAC 625339_25353837_60975_ ATAATTGATTATGCCAGCAAACACC 120 548 HPV18REF.1_1_109 ATTGTTATGACCCTGTGCCTTATGT AACCAATATGGTTTATTAAACAACT GGGAGTCAGA GGTAACAATAGAGCCACTTGGAGAG GGAGAATACA 625339_25353837_60975_ CATATTGGTTACATAAGGCACAGGG 120 549 HPV18REF.1_1_110 TCATAACAATGGTGTTTGCTGGCAT AATCAATTATTTGTTACTGTGGTAG ATACCACTC GCAGTACCAATTTAACAATATGTGC TTCTACACAGT 625339_25353837_60975_ CCTCAACATGTCTGCTATACTGCTT 120 550 HPV18REF.1_1_111 AAATTTGGTAGCATCATATTGCCCA GGTACAGGAGACTGTGTAGAAGCAC ATATTGTTA AATTGGTACTGCGAGTGGTATCTAC CACAGTAACAA 625339_25353837_60975_ CTCCTGTACCTGGGCAATATGATGC 120 551 HPV18REF.1_1_112 TACCAAATTTAAGCAGTATAGCAGA CATGTTGAGGAATATGATTTGCAGT TTATTTTTCA GTTGTGTACTATTACTTTAACTGCA GATGTTATGT 625339_25353837_60975_ GGGGGGGAACACCAAAGTTCCAATC 120 552 HPV18REF.1_1_113 CTCTAAAATACTGCTATTCATACTA TGAATATAGGACATAACATCTGCAG TTAAAGTAAT AGTACACAACTGAAAAATAAACTGC AAATCATATT 625339_25353837_60975_ CCTATATTCATAGTATGAATAGCAG 120 553 HPV18REF.1_1_114 TATTTTAGAGGATTGGAACTTTGGT GTTCCCCCCCCGCCAACTACTAGTT TGGTGGATA CATATCGTTTTGTACAATCTGTTGC TATTACCTGTC 625339_25353837_60975_ CATTCCAAAACTTTAACTTATCATA 120 554 HPV18REF.1_1_115 GGGATCCTTATTTTCAGCCGGTGCA GCATCCTTTTGACAGGTAATAGCAA CAGATTGTAC AAAACGATATGTATCCACCAAACTA GTAGTTGGCG 625339_25353837_60975_ AAAAGGATGCTGCACCGGCTGAAAA 120 555 HPV18REF.1_1_116 TAAGGATCCCTATGATAAGTTAAAG TTTTGGAATGTGGATTTAAAGGAAA AGTTTTCTT TAGACTTAGATCAATATCCCCTTGG ACGTAAATTTT 625339_25353837_60975_ ATGGAGCAGAACGTTTGCGAGGGCC 120 556 HPV18REF.1_1_117 TATGGTGGGCTTGCGACGCAATCCA GCCTGAACCAAAAATTTACGTCCAA GGGGATA TTGATCTAAGTCTAAAGAAAACTTT TCCTTTAAATCCA 625339_25353837_60975_ TGGTTCAGGCTGGATTGCGTCGCAA 120 557 HPV18REF.1_1_118 GCCCACCATAGGCCCTCGCAAACGT TCTGCTCCATCTGCCACTACGTCTT CTAAACCT GCCAAGCGTGTGCGTGTACGTGCCA GGAAGTAATATG 625339_25353837_60975_ ACAAACACAAACACAGGACATACAA 120 558 HPV18REF.1_1_119 ACACAACAATAGATGTATATATATA TACACACACACATATTACTTCCTGG CACGTACACG CACACGCTTGGCAGGTTTAGAAGAC GTAGTGGCAG 625339_25353837_60975_ TGTGTGTGTATATATATATACATCT 120 559 HPV18REF.1_1_120 ATTGTTGTGTTTGTATGTCCTGTGT TTGTGTTTGTTGTATGATTGCATTG TATGGTATGT ATGGTTGTTGTTGTATGTTGTATGT TACTATATTT 625339_25353837_60975_ GGCGCAACCACATAACACACAGAAC 120 560 HPV18REF.1_1_121 CACAAAACATATTTTATTTAATGCC ACATACCAACAAATATAGTAACATA CAACATACAA CAACAACCATACATACCATACAATG CAATCATACA 625339_25353837_60975_ GTTGGTATGTGGCATTAAATAAAAT 120 561 HPV18REF.1_1_122 ATGTTTTGTGGTTCTGTGTGTTATG TGGTTGCGCCCTAGTGAGTAACAAC TGTATTTGT GTTTGTGGTATGGGTGTTGCTTGTT GGGCTATATAT 625339_25353837_60975_ GATTGTAGGATAAAATGGATGCTGT 120 562 HPV18REF.1_1_123 AAGGTGTGCAGTTTTATAACTTGAA ATACAGGACAATATATAGCCCAACA AGCAACACC CATACCACAAACACAAATACAGTTG TTACTCACTAG 625339_25353837_60975_ TGTCCTGTATTTCAAGTTATAAAAC 120 563 HPV18REF.1_1_124 TGCACACCTTACAGCATCCATTTTA TCCTACAATCCTCCATTTTGCTGTG CAACCGATTT CGGTTGCCTTTGGCTTATGTCTGTG GTTTTCTGCA 625339_25353837_60975_ AATATGTAGGAGCAGTGCCCAAAAG 120 564 HPV18REF.1_1_125 ATTAAAGTTTGCAATAGTGCCAGCG TACTGTATTGTGCAGAAAACCACAG ACATAAGCC AAAGGCAACCGAAATCGGTTGCACA GCAAAATGGAG 625339_25353837_60975_ CAATACAGTACGCTGGCACTATTGC 120 565 HPV18REF.1_1_126 AAACTTTAATCTTTTGGGCACTGCT CCTACATATTTTGAACAATTGGCGC GCCTCTTTG GCGCATATAAGGCGCACCTGGTATT AGTCATTTTCC 625339_25353837_60975_ GTTTTATTACTTAGGGAGTGGATAT 120 566 HPV18REF.1_1_127 AGTTATGCAAGCAATTGTTGTAGCG CACCTGGACAGGAAAATGACTAATA CCAGGTGCG CCTTATATGCGCCAAAGAGGCGCGC CAATTGTTCAA 625339_25353837_60975_ TGTCCAGGTGCGCTACAACAATTGC 120 567 HPV18REF.1_1_128 TTGCATAACTATATCCACTCCCTAA GTAATAAAACTGCTTTTAGGCACAT ATTTTAGTTT GTTTTTACTTAAGCTAATTGCATAC TTGGCTTGTA 625339_25353837_60975_ GCTTAGTCATATTATAGTTCATGTT 120 568 HPV18REF.1_1_129 AAGGGTAGACAGAATGTTGGACATG AAAGTAGTTGTACAAGCCAAGTATG CAATTAGCT TAAGTAAAAACAAACTAAAATATGT GCCTAAAAGCA 625339_25353837_60975_ CAACTACTTTCATGTCCAACATTCT 117 569 HPV18REF.1_1_130 GTCTACCCTTAACATGAACTATAAT ATGACTAAGCTGTGCATACATAGTT TATGCAACCG AAATAGGTTGGGCAGCACATACTAT ACTTTTC

HPV31_DoubleStrand_ SEQ SequenceName Sequence Length ID#: 625339_25353838_333048_ GATTTTTGAACATGGCGTCTGTAGG 120 57 HPV31REF.1_1_1 TTTGCACAAAATACTATGTGCTTTA TATACCAACCGTTTTCGGTTCACCA CTTTCGGTCACTCCCTACTTTTTT ATACTAAGATTATTATTATTA 625339_25353838_333048_ GGTTGGTATATAAAGCACATAGTAT 120 57 HPV31REF.1_1_2 TTTGTGCAAACCTACAGACGCCATG TTCAAAAATCCTGCAGAAAGACCTC GGAAATTGCATGAACTAAGCTC GGCATTGGAAATACCCTACGATG 625339_25353838_333048_ AATCTAATACCTCTGTTTCTGTTAA 120 57 HPV31REF.1_1_3 CTGACCTTTGCAGTAGACACAATTC AATCTTAGTTCATCGTAGGGTATTT CCAATGCCGAGCTTAGTTCATGC AATTTCCGAGGTCTTTCTGCAG 625339_25353838_333048_ AACTAAGATTGAATTGTGTCTACTG 120 57 HPV31REF.1_1_4 CAAAGGTCAGTTAACAGAAACAGAG GTATTAGATTTTGCATTTACAGATT TAACAATAGTATATAGGGACGAC ACACCACACGGAGTGTGTACAA 625339_25353838_333048_ CATACACACTATATCTATACCATCT 120 57 HPV31REF.1_1_5 AAATTCACTTACTTTTGAATAAAAT CTTAAACATTTTGTACACACTCCGT GTGGTGTGTCGTCCCTATATACTAT TGTTAAATCTGTAAATGCAA 625339_25353838_333048_ AATGTTTAAGATTTTATTCAAAAGT 120 57 HPV31REF.1_1_6 AAGTGAATTTAGATGGTATAGATAT AGTGTGTATGGAACAACATTAGAAA AATTGACAAACAAAGGTATATGTG ATTTGTTAATTAGGTGTATAA 625339_25353838_333048_ ATCGTTTCTTTTTATCCAAATGTCT 120 57 HPV31REF.1_1_7 TTGTTTTTCTTCTGGACACAACGGT CTTTGACACGTTATACACCTAATTA ACAAATCACATATACCTTTGTTTGT CAATTTTTCTAATGTTGTTC 625339_25353838_333048_ CGTGTCAAAGACCGTTGTGTCCAGA 120 57 HPV31REF.1_1_8 AGAAAAACAAAGACATTTGGATAAA AAGAAACGATTCCACAACATAGGAG GAAGGTGGACAGGACGTTGCA TAGCATGTTGGAGAAGACCTCGTA 625339_25353838_333048_ TCTAACACATAGTCTTGCAACGTAG 120 57 HPV31REF.1_1_9 GTGTTTCTCCACGCATGTTTACACT TGGGTTTCAGTACGAGGTCTTCTCC AACATGCTATGCAACGTCCTGT CCACCTTCCTCCTATGTTGTGGA 625339_25353838_333048_ CTGAAACCCAAGTGTAAACATGCGT 120 57 HPV31REF.1_1_10 GGAGAAACACCTACGTTGCAAGACT ATGTGTTAGATTTGCAACCTGAGGC AACTGACCTCCACTGTTATGA GCAATTACCCGACAGCTCAGATGA 625339_25353838_333048_ ATATTGTAATTGGATGTGTCCGGTT 120 58 HPV31REF.1_1_11 CTGCTTGTCCAGCTGGACTGTCTAT GACATCCTCCTCATCTGAGCTGTCG GGTAATTGCTCATAACAGTGGA GGTCAGTTGCCTCAGGTTGCAAA 625339_25353838_333048_ GGAGGATGTCATAGACAGTCCAGCT 120 58 HPV31REF.1_1_12 GGACAAGCAGAACCGGACACATCCA ATTACAATATCGTTACCTTTTGTTG TCAGTGTAAGTCTACACTTCGT TTGTGTGTACAGAGCACACAAGT 625339_25353838_333048_ CAGTTGGGGCACACGATTCCAAATG 120 58 HPV31REF.1_1_13 AGCCCATTAACAGCTCTTGCAATAT GCGAATATCTACTTGTGTGCTCTGT ACACACAAACGAAGTGTAGACT TACACTGACAACAAAAGGTAACG 625339_25353838_333048_ AGATATTCGCATATTGCAAGAGCTG 120 58 HPV31REF.1_1_14 TTAATGGGCTCATTTGGAATCGTGT GCCCCAACTGTTCTACTAGACTGTA ACTACAATGGCTGATCCAGCAG GTACAGATGGGGAGGGGACGGGA 625339_25353838_333048_ TGAAATGTTGTCCCCTGTCTGTCTG 120 58 HPV31REF.1_1_15 TCAATTACTGCTTCTACATAAAACC AACCATTGCATCCCGTCCCCTCCCC ATCTGTACCTGCTGGATCAGCC ATTGTAGTTACAGTCTAGTAGAA 625339_25353838_333048_ TGCAATGGTTGGTTTTATGTAGAAG 120 58 HPV31REF.1_1_16 CAGTAATTGACAGACAGACAGGGGA CAACATTTCAGAGGACGAAAATGAA GACAGTAGTGATACTGGGGAG GATATGGTTGACTTTATTGACAAT 625339_25353838_333048_ CTGTGCATGAAACAATGCCTGTGCT 120 58 HPV31REF.1_1_17 GTCTCTGCTTCTGCCTGATTGTTGT ATACATTACAATTGTCAATAAAGTC AACCATATCCTCCCCAGTATCAC TACTGTCTTCATTTTCGTCCTC 625339_25353838_333048_ TGTAATGTATACAACAATCAGGCAG 120 58 HPV31REF.1_1_18 AAGCAGAGACAGCACAGGCATTGTT TCATGCACAGGAAGCGGAGGAACAT GCAGAGGCTGTGCAGGTTCT AAAACGAAAGTATGTAGGTAGTCCT 625339_25353838_333048_ GCATATAGCTTTTAACCGTGGACTA 120 58 HPV31REF.1_1_19 ATATTATAATCCACACAACTACTAA TATCACTTAAAGGACTACCTACATA CTTTCGTTTTAGAACCTGCACAGC CTCTGCATGTTCCTCCGCTTC 625339_25353838_333048_ TTAAGTGATATTAGTAGTTGTGTGG 120 58 HPV31REF.1_1_20 ATTATAATATTAGTCCACGGTTAAA AGCTATATGCATAGAAAATAACAGT AAAACAGCAAAACGAAGACTCTTT GAACTTCCAGACAGCGGGTAT 625339_25353838_333048_ TAATGTTGTTTGTTGCTCCTCTACC 120 59 HPV31REF.1_1_21 TGTACCATCTGCTGCGTTTCCACTT CAGTATTGCCATACCCGCTGTCTGG AAGTTCAAAGAGTCTTCGTTTTG CTGTTTTACTGTTATTTTCTAT 625339_25353838_333048_ GGCAATACTGAAGTGGAAACGCAGC 120 59 HPV31REF.1_1_22 AGATGGTACAGGTAGAGGAGCAACA AACAACATTAAGTTGTAATGGTAGT GACGGGACACATAGTGAACG AGAGAATGAAACTCCAACACGTAAT 625339_25353838_333048_ TTCTTTAAATTTACCTAACATAGCA 120 59 HPV31REF.1_1_23 GCTTTACCATTGCTAGTTTTTAACA CTTGCAATATATTACGTGTTGGAGT TTCATTCTCTCGTTCACTATGTGTC CCGTCACTACCATTACAACT 625339_25353838_333048_ ATATTGCAAGTGTTAAAAACTAGCA 120 59 HPV31REF.1_1_24 ATGGTAAAGCTGCTATGTTAGGTAA ATTTAAAGAATTATATGGTGTAAGT TTTATGGAACTAATTAGGCCATTT CAAAGCAATAAAAGCACATGT 625339_25353838_333048_ GGTTTTAAATCCTTCTGCAACTGTA 120 59 HPV31REF.1_1_25 CCTGTAACTCCAAACGCAGCTACAC ACCAATCAGTACATGTGCTTTTATT GCTTTGAAATGGCCTAATTAGTT CCATAAAACTTACACCATATAA 625339_25353838_333048_ ACTGATTGGTGTGTAGCTGCGTTTG 120 59 HPV31REF.1_1_26 GAGTTACAGGTACAGTTGCAGAAGG ATTTAAAACCCTATTGCAACCATAT TGTTTGTATTGCCATTTACAAAG TTTAGCATGTTCCTGGGGCATG 625339_25353838_333048_ TAATTTTTCAATTGTTATTCTATTT 120 59 HPV31REF.1_1_27 TTTGCACATTTAAATCTCACAAGCA TTAACATAACCATGCCCCAGGAACA TGCTAAACTTTGTAAATGGCAATAC AAACAATATGGTTGCAATAG 625339_25353838_333048_ GTTATGTTAATGCTTGTGAGATTTA 120 59 HPV31REF.1_1_28 AATGTGCAAAAAATAGAATAACAAT TGAAAAATTATTAGAAAAATTATTG TGTATATCTACAAATTGTATGTTAA TTCAGCCACCCAAATTACGT 625339_25353838_333048_ ATATACATCGCTAATGTTTGACATT 120 59 HPV31REF.1_1_29 CCTGTTCTGTACCAATATAATGCTG CAGCTGTGCTACGTAATTTGGGTGG CTGAATTAACATACAATTTGTAG ATATACACAATAATTTTTCTAA 625339_25353838_333048_ AGCACAGCTGCAGCATTATATTGGT 120 59 HPV31REF.1_1_30 ACAGAACAGGAATGTCAAACATTAG CGATGTATATGGTGAAACACCAGAA TGGATAGAAAGACAAACAGTAT TACAGCATAGTTTTAATGACACA 625339_25353838_333048_ ACTATCATCCATAACATCATTGTCA 120 60 HPV31REF.1_1_31 TATGCCCATTGTACCATTTGGGACA AATCAAATGTTGTGTCATTAAAACT ATGCTGTAATACTGTTTGTCTTTC TATCCATTCTGGTGTTTCACC 625339_25353838_333048_ ACATTTGATTTGTCCCAAATGGTAC 120 60 HPV31REF.1_1_32 AATGGGCATATGACAATGATGTTAT GGATGATAGTGAAATTGCCTATAAA TATGCACAATTAGCTGACAGTGA TAGTAATGCATGTGCATTTTTA 625339_25353838_333048_ TTTATAATGTCTACACATTGTTCCA 120 60 HPV31REF.1_1_33 CAATCTTTAACTATTTTTGCCTGCG AATTACTTTTTAAAAATGCACATGC ATTACTATCACTGTCAGCTAATTGT GCATATTTATAGGCAATTTC 625339_25353838_333048_ AAAAGTAATTCGCAGGCAAAAATAG 120 60 HPV31REF.1_1_34 TTAAAGATTGTGGAACAATGTGTAG ACATTATAAACGAGCAGAAAAACGA CAAATGTCCATGGGACAGTGGA TTAAAAGTAGATGTGACAAAGTT 625339_25353838_333048_ AAATTCTATTTGTTGATATCTTAAA 120 60 HPV31REF.1_1_35 AACTTTACTATGTCCCTCCAGTCAC CTTCGTCACTAACTTTGTCACATCT ACTTTTAATCCACTGTCCCATGGA CATTTGTCGTTTTTCTGCTCG 625339_25353838_333048_ AGTGACGAAGGTGACTGGAGGGACA 120 60 HPV31REF.1_1_36 TAGTAAAGTTTTTAAGATATCAACA AATAGAATTTGTGTCATTTTTATCT GCATTAAAGCTGTTTTTAAAAGG AGTGCCAAAGAAAAACTGTATT 625339_25353838_333048_ AAAGCTAATAAGGCTCATTCCAAAA 120 60 HPV31REF.1_1_37 TATGATTTACCTGTATTAGGTGCAC CATGTATTAAAATACAGTTTTTCTT TGGCACTCCTTTTAAAAACAGCTT TAATGCAGATAAAAATGACAC 625339_25353838_333048_ TTAATACATGGTGCACCTAATACAG 120 60 HPV31REF.1_1_38 GTAAATCATATTTTGGAATGAGCCT TATTAGCTTTTTACAAGGATGTATA ATATCATATGCAAATTCAAAAAGT CATTTTTGGTTACAACCACTG 625339_25353838_333048_ GTCTATATAATGCCAACATGGCGTT 120 60 HPV31REF.1_1_39 GTAGCATCATCTAACATGCCTATTT TAGCATCAGCCAGTGGTTGTAACCA AAAATGACTTTTTGAATTTGCAT ATGATATTATACATCCTTGTAA 625339_25353838_333048_ GCTGATGCTAAAATAGGCATGTTAG 120 60 HPV31REF.1_1_40 ATGATGCTACAACGCCATGTTGGCA TTATATAGACAATTACCTACGAAAT GCACTAGATGGCAACCCTGTAT CTATAGATGTAAAGCATAAAGCT 625339_25353838_333048_ ATCCTTACCTGCATTTATATTAGAT 120 61 HPV31REF.1_1_41 GTAATCAATAAAGGAGGACATTTTA ACTGCATTAAAGCTTTATGCTTTAC ATCTATAGATACAGGGTTGCCATC TAGTGCATTTCGTAGGTAATT 625339_25353838_333048_ TTAATGCAGTTAAAATGTCCTCCTT 120 61 HPV31REF.1_1_42 TATTGATTACATCTAATATAAATGC AGGTAAGGATGACAGATGGCCATAC CTACATAGCAGACTGGTGGTTTT TACATTTCCAAATCCATTTCCA 625339_25353838_333048_ GAAAAAGGATTTCCAGTTTTTATCA 120 61 HPV31REF.1_1_43 CTTAATTCATATACTGGATTTCCGT TTTTGTCAAATGGAAATGGATTTGG AAATGTAAAAACCACCAGTCTGCT ATGTAGGTATGGCCATCTGTC 625339_25353838_333048_ TTTGACAAAAACGGAAATCCAGTAT 120 61 HPV31REF.1_1_44 ATGAATTAAGTGATAAAAACTGGAA ATCCTTTTTCTCAAGGACGTGGTGC AGATTAAATTTGCACGAGGAAGA GGACAAAGAAAACGATGGAGAC 625339_25353838_333048_ CTATCATTTTCATAATGTTCTAATA 120 61 HPV31REF.1_1_45 TTTTGTCCTGACACACATTTAAACG TTGAGAAAGAGTCTCCATCGTTTTC TTTGTCCTCTTCCTCGTGCAAATTT AATCTGCACCACGTCCTTGA 625339_25353838_333048_ TCTTTCTCAACGTTTAAATGTGTGT 120 61 HPV31REF.1_1_46 CAGGACAAAATATTAGAACATTATG AAAATGATAGTAAACGACTTTGTGA TCATATAGACTATTGGAAACATAT TCGACTTGAATGTGTATTAAT 625339_25353838_333048_ GACAACGCTGGCACCACCTGGTGGT 120 61 HPV31REF.1_1_47 TAATACTGTGTATTCCCATTTCTCT TGCTTTATACATTAATACACATTCA AGTCGAATATGTTTCCAATAGTC TATATGATCACAAAGTCGTTTA 625339_25353838_333048_ GTATAAAGCAAGAGAAATGGGAATA 120 61 HPV31REF.1_1_48 CACAGTATTAACX+ACCAGGTGGTG CCAGCGTTGTCAGTATCAAAGGCCA AAGCCTTACAAGCTATTGAACT ACAAATGATGTTGGAAACATTAAA 625339_25353838_333048_ AAATACAGTTCAAGACTTGTTTGCT 120 61 HPV31REF.1_1_49 GCATTGTCCAGTCCTCATTTTTGTA TTCAGTGTTATTTAATGTTTCCAAC ATCATTTGTAGTTCAATAGCTTGTA AGGCTTTGGCCTTTGATACT 625339_25353838_333048_ TAACACTGAATACAAAAATGAGGAC 120 61 HPV31REF.1_1_50 TGGACAATGCAGCAAACAAGTCTTG AACTGTATTTAACTGCACCTACAGG GTGTTTAAAAAAACATGGATATA CTGTAGAGGTGCAATTTGATGG 625339_25353838_333048_ CCATCTATACATAGGTATATAAATT 120 62 HPV31REF.1_1_51 TCCAGTTAGTATAATGCATGGTGTT GTGTACATCACCATCAAATTGCACC TCTACAGTATATCCATGTTTTTTT AAACACCCTGTAGGTGCAGTT 625339_25353838_333048_ TGATGTACACAACACCATGCATTAT 120 62 HPV31REF.1_1_52 ACTAACTGGAAATTTATATACCTAT GTATAGATGGCCAATGTACTGTTGT GGAAGGGCAAGTTAATTGTAAGG GCATTTATTATGTACATGAAGG 625339_25353838_333048_ TTTTTACCAGTCCCATATTTTTTTG 120 62 HPV31REF.1_1_53 CCTCTTCTGTAAAATTTACAAAATA TGTTATATGTCCTTCATGTACATAA TAAATGCCCTTACAATTAACTTGCC CTTCCACAACAGTACATTGG 625339_25353838_333048_ ACATATAACATATTTTGTAAATTTT 120 62 HPV31REF.1_1_54 ACAGAAGAGGCAAAAAAATATGGGA CTGGTAAAAAATGGGAAGTGCATGC GGGTGGTCAGGTAATTGTTTTTC CTGAATCTGTATTTAGCAGTGA 625339_25353838_333048_ GATGTGGTGGTGTTGTTGGCTGTTG 120 62 HPV31REF.1_1_55 GTAGCTTTGTAACAATCCCAGCAAA GGATATTTCGTCACTGCTAAATACA GATTCAGGAAAAACAATTACCT GACCACCCGCATGCACTTCCCAT 625339_25353838_333048_ CGAAATATCCTTTGCTGGGATTGTT 120 62 HPV31REF.1_1_56 ACAAAGCTACCAACAGCCAACAACA CCACCACATCGAATTCCAAAACCTG CGCCTTGGGCACCAGTGAAGG TGTGCGGCGGGCGACGACGTCTAC 625339_25353838_333048_ CGCAACAACTTGTTGGGGTGGTGGG 120 62 HPV31REF.1_1_57 TGTTTCTGTGCTCTGGCTCTGTTCT TGGTCGCTTAGTAGACGTCGTCGCC CGCCGCACACCTTCACTGGT GCCCAAGGCGCAGGTTTTGGAATTC 625339_25353838_333048_ TAAGCGACCAAGAACAGAGCCAGAG 120 62 HPV31REF.1_1_58 CACAGAAACACCCACCACCCCAACA AGTTGTTGCGAGGCGACTCCGTGGA CAGTGTCAACTGTGGGGTTA TCAGTGCAGCTGCATGCACAAACCA 625339_25353838_333048_ TTTGCATCACCTTTTAAGTGTATTA 120 62 HPV31REF.1_1_59 TAGGTGTAGTTGCAGGACAACTGAC AGCCCTTGTTTGGTTTGTGCATGCA GCTGCACTGATAACCCCACAGT TGACACTGTCCACGGAGTCGCCT 625339_25353838_333048_ AACAAGGGCTGTCAGTTGTCCTGCA 120 62 HPV31REF.1_1_60 ACTACACCTATAATACACTTAAAAG GTGATGCAAATATATTAAAATGTTT AAGATATAGGCTGTCAAAATATAA ACAATTGTATGAACAAGTGTC 625339_25353838_333048_ GTTAAGGTTACAATAGCATTTTTAT 120 63 HPV31REF.1_1_61 GTTTTCCATCTGTACATGTCCAATG CCATGTAGATGACACTTGTTCATAC AATTGTTTATATTTTGACAGCCTA TATCTTAAACATTTTAATATA 625339_25353838_333048_ ATCTACATGGCATTGGACATGTACA 120 63 HPV31REF.1_1_62 GATGGAAAACATAAAAATGCTATTG TAACCTTAACATATATAAGTACATC ACAAAGAGACGATTTTTTAAATAC TGTAAAAATACCTAACACAGT 625339_25353838_333048_ CTGTAGAAATATTTAGTTCAATCAT 120 63 HPV31REF.1_1_63 TAGGCTAAATAGTCATATATCCTGT TGACACTGATACTGTGTTAGGTATT TTTACAGTATTTAAAAAATCGTCTC TTTGTGATGTACTTATATAT 625339_25353838_333048_ ATCAGTGTCAACAGGATATATGACT 120 63 HPV31REF.1_1_64 ATTTAGCCTAATGATTGAACTAAAT ATTTCTACAGTAAGCATTGTGCTAT GCTTTTTGCTTTGCTTTTGTGTGC TACTATTTGTGTGTCTTGTCA 625339_25353838_333048_ AAATCACAATTAATAATAGTAGTGT 120 63 HPV31REF.1_1_65 TGCATATACCGACACAGACAGCACA AGTGGACGTATGACAAGACACACAA ATAGTAGCACACAAAAGCAAAG CAAAAAGCATAGCACAATGCTTA 625339_25353838_333048_ TACGTCCACTTGTGCTGTCTGTGTC 120 63 HPV31REF.1_1_66 GGTATATGCAACACTACTATTATTA ATTGTGATTTTATGGGTTATTGCAA CCTCTCCATTACGTTGTTTTTGTA TATATGTTGTGTTTATATATA 625339_25353838_333048_ AGTAAAAAAGTTACTGTTGACTTAA 120 63 HPV31REF.1_1_67 AAAAGATGCATGTGTATGAATTACA AATAATGGAATATATATAAACACAA CATATATACAAAAACAACGTAATG GAGAGGTTGCAATAACCCATA 625339_25353838_333048_ TTCCATTATTTGTAATTCATACACA 120 63 HPV31REF.1_1_68 TGCATCTTTTTTAAGTCAACAGTAA CTTTTTTACTTGTGTATACTGTTGT TTgtattggtattggtattggtatt ggtattggtattggt atAAT 625339_25353838_333048_ AGTGCGTTTTGTAGAGCGTTTGGAC 120 63 HPV31REF.1_1_69 CGCATGGTAATAATAAAAAAAAAGT AAAAAAGTTTATTATACCAATACCA ATACCAATACCAATACCAATACC AATACAAACAACAGTATACACA 625339_25353838_333048_ AAACTTTTTTACTTT 120 63 HPV31REF.1_1_70 TTTTTTATTATTACCATGCG GTCCAAACGCTCTACAAAACGCACT AAACGTGCGTCTGCTACACAATTAT ATCAAACATGTAAA GCAGCAGGTACTTGTCCATCA 625339_25353838_333048_ ACTACCATACCTTAATATTTGGTCT 120 64 HPV31REF.1_1_71 GCAATGGTAGTATGTTCTATTTTAG GTATAACGTCTGATGGACAAGTACC TGCTGCTTTACATGTTTGATATAA TTGTGTAGCAGACGCACGTTT 625339_25353838_333048_ GACGTTATACCTAAAATAGAACATA 120 64 HPV31REF.1_1_72 CTACCATTGCAGACCAAATATTAAG GTATGGTAGTATGGGTGTTTTTTTT GGTGGGTTGGGTATTGGGTCCG GCTCTGGTACTGGGGGTCGCACT 625339_25353838_333048_ TCTAATAGGTATACTTGCCTCAGAT 120 64 HPV31REF.1_1_73 ACTGTAGAAGGACGTGTACTAAGAG GGACATATCCAGTGCGACCCCCAGT ACCAGAGCCGGACCCAATACC CAACCCACCAAAAAAAACACCCAT 625339_25353838_333048_ GGATATGTCCCTCTTAGTACACGTC 120 64 HPV31REF.1_1_74 CTTCTACAGTATCTGAGGCAAGTAT ACCTATTAGACCACCAGTTAGCATT GACCCTGTAGGTCCCTTGGACC CCTCTATAGTAAGTCTTGTTGAA 625339_25353838_333048_ AGATGTTGTAGGAGGGTGTGGTATA 120 64 HPV31REF.1_1_75 GGAGCAGGGGCACCAACATCAACAA TTCCAGATTCTTCAACAAGACTTAC TATAGAGGGGTCCAAGGGAC CTACAGGGTCAATGCTAACTGGTGG 625339_25353838_333048_ GAATCTGGAATTGTTGATGTTGGTG 120 64 HPV31REF.1_1_76 CCCCTGCTCCTATACCACACCCTCC TACAACATCTGGGTTTGACATTGCT ACAACTGCAGACACAACACCTG CAATTTTAGATGTAACAAGTGTT 625339_25353838_333048_ TGCAGGTGTAGGAGGCTGCAATACA 120 64 HPV31REF.1_1_77 GATGGATCAGTAAAAGTAGGATTTT CATGTGTGCTAACACTTGTTACATC TAAAATTGCAGGTGTTGTGTCT GCAGTTGTAGCAATGTCAAACCC 625339_25353838_333048_ AGCACACATGAAAATCCTACTTTTA 120 64 HPV31REF.1_1_78 CTGATCCATCTGTATTGCAGCCTCC TACACCTGCAGAAACATCAGGTCAT TTACTACTTTCATCATCATCTATT AGCACACATAATTATGAGGAA 625339_25353838_333048_ GGGTGTGCTACTTGTTATGTTTTCA 120 64 HPV31REF.1_1_79 TTATTAGTAGAAACAATAAATGTAT CCATAGGTATTTCCTCATAATTATG TGTGCTAATAGATGATGATGAAAG TAGTAAATGACCTGATGTTTC 625339_25353838_333048_ ATACCTATGGATACATTTATTGTTT 120 64 HPV31REF.1_1_80 CTACTAATAATGAAAACATAACAAG TAGCACACCCATTCCAGGGGTGCGC CGTCCTGCACGTTTAGGGTTATA TAGTAAGGCTACACAACAAGTA 625339_25353838_333048_ AGGGTTTTCATATGTAATTAGCTGT 120 65 HPV31REF.1_1_81 TTTGGAGCACTAAGAAACGTTGGAT CAATAACTTTTACTTGTTGTGTAGC CTTACTATATAACCCTAAACGTG CAGGACGGCGCACCCCTGGAAT 625339_25353838_333048_ AAAGTTATTGATCCAACGTTTCTTA 120 65 HPV31REF.1_1_82 GTGCTCCAAAACAGCTAATTACATA TGAAAACCCTGCCTATGAAACTGTA AATGCTGAAGAATCTTTATACTTT TCCAATACATCGCATAATATA 625339_25353838_333048_ ACGTGAGGTAAGGGCAGGCCTATGT 120 65 HPV31REF.1_1_83 AATGCTATAATATCTAGAAAGTCGG GATCAGGGGCTATATTATGCGATGT ATTGGAAAAGTATAAAGATTCT TCAGCATTTACAGTTTCATAGGC 625339_25353838_333048_ GCCCCTGATCCCGACTTTCTAGATA 120 65 HPV31REF.1_1_84 TTATAGCATTACATAGGCCTGCCCT TACCTCACGTAGGAACACTGTTAGA TATAGTAGACTAGGTAATAAAC AAACTTTGCGCACTCGTAGTGGT 625339_25353838_333048_ ACCTGCAGGATTAATACTACTAATA 120 65 HPV31REF.1_1_85 TCATAATAATAATGCACCCTTGCAC CAATAGTAGCACCACTACGAGTGCG CAAAGTTTGTTTATTACCTAGTC TACTATATCTAACAGTGTTCCT 625339_25353838_333048_ GCTACTATTGGTGCAAGGGTGCatt 120 65 HPV31REF.1_1_86 attattatgatattagtagtattaA TCCTGCAGGTGAAAGTATTGAAATG CAACCTTTAGGGGCGTCTGCAACTA CTACTTC TACTTTAAATGAT 625339_25353838_333048_ ATTATGTGTGGCAGGTGTATCCACA 120 65 HPV31REF.1_1_87 GTAAAATCAGTGTCTGCATAAATGT CATATAAGCCATCATTTAAAGTAGA AGTAGTAGTTGCAGACGCCCCT AAAGGTTGCATTTCAATACTTTC 625339_25353838_333048_ GGCTTATATGACATTTATGCAGACA 120 65 HPV31REF.1_1_88 CTGATTTTACTGTGGATACACCTGC CACACATAATGTTTCCCCTTCTACT GCTGTACAGTCCACATCTGCTGT GTCTGCCTATGTACCTACAAAT 625339_25353838_333048_ AGGTACATCAGGCCCAGAAAATATG 120 65 HPV31REF.1_1_89 GGAATGTCAAAACCTGTACTTAGTG GCACAGTGGTATTTGTAGGTACATA GGCAGACACAGCAGATGTGGA CTGTACAGCAGTAGAAGGGGAAAC 625339_25353838_333048_ ACCACTGTGCCACTAAGTACAGGTT 120 65 HPV31REF.1_1_90 TTGACATTCCCATATTTTCTGGGCC TGATGTACCTATAGAGCATGCACCT ACACAGGTTTTCCCATTTCCTTT GGCCCCTACAACGCCACAAGTG 625339_25353838_333048_ ACGTTTTAACATATAATAACTAGGG 120 66 HPV31REF.1_1_91 TGCAAATAAAAATCACCCCCATCAA CAAAAATAGACACTTGTGGCGTTGT AGGGGCCAAAGGAAATGGGAAA ACCTGTGTAGGTGCATGCTCTAT 625339_25353838_333048_ TCTATTTTTGTTGATGGGGGTGATT 120 66 HPV31REF.1_1_92 TTTATTTGCACCCTAGTTATTATAT GTTAAAACGTCGACGTAAACGTGTA TCATATTTTTTTACAGATGTCTCT GTGGCGGCCTAGCGAGGCTAC 625339_25353838_333048_ CGTGTTACATATTCATCCGTGCTTA 120 66 HPV31REF.1_1_93 CAACTTTAGACACTGGGACAGGTGG TAAGTAGACAGTAGCCTCGCTAGGC CGCCACAGAGACATCTGTAAA AAAATATGATACACGTTTACGTCG 625339_25353838_333048_ TGTCTACTTACCACCTGTCCCAGTG 120 66 HPV31REF.1_1_94 TCTAAAGTTGTAAGCACGGATGAAT ATGTAACACGAACCAACATATATTA TCACGCAGGCAGTGCTAGGCTG CTTACAGTAGGCCATCCATATTA 625339_25353838_333048_ TGTAATCCTGACACCTTTGGTACAA 120 66 HPV31REF.1_1_95 CTATTTTTTTAGGATTGTCAGATTT AGGTATGGAATAATATGGATGGCCT ACTGTAAGCAGCCTAGCACTGCC TGCGTGATAATATATGTTGGTT 625339_25353838_333048_ TTCCATACCTAAATCTGACAATCCT 120 66 HPV31REF.1_1_96 AAAAAAATAGTTGTACCAAAGGTGT CAGGATTACAATATAGGGTATTTAG GGTTCGTTTACCAGATCCAAACA AATTTGGATTTCCTGATACATC 625339_25353838_333048_ CGACCTACCTCTAAACCAACACAGG 120 66 HPV31REF.1_1_97 CCCAAACTAAGCGTTGAGTTTCAGG ATTATAAAAAGATGTATCAGGAAAT CCAAATTTGTTTGGATCTGGTA AACGAACCCTAAATACCCTATAT 625339_25353838_333048_ TTTTTATAATCCTGAAACTCAACGC 120 66 HPV31REF.1_1_98 TTAGTTTGGGCCTGTGTTGGTTTAG AGGTAGGTCGCGGGCAGCCATTAGG TGTAGGTATTAGTGGTCATCCA TTATTAAATAAATTTGATGACAC 625339_25353838_333048_ ATTGATATACATTCCCTATTATCAG 120 66 HPV31REF.1_1_99 TGCCAGGACCACCGGCATATCTATT AGAGTTTTCAGTGTCATCAAATTTA TTTAATAATGGATGACCACTAATA CCTACACCTAATGGCTGCCCG 625339_25353838_333048_ TGAAAACTCTAATAGATATGCCGGT 120 66 HPV31REF.1_1_100 GGTCCTGGCACTGATAATAGGGAAT GTATATCAATGGATTATAAACAAAC ACAACTGTGTTTACTTGGTTGCA AACCACCTATTGGAGAGCATTG 625339_25353838_333048_ TCTAATGGAGGACAATCACCAGGGG 120 67 HPV31REF.1_1_101 TAATAGCATTGTTACTACAAGGACT ACCTTTACCCCAATGCTCTCCAATA GGTGGTTTGCAACCAAGTAAAC ACAGTTGTGTTTGTTTATAATCC 625339_25353838_333048_ GGGTAAAGGTAGTCCTTGTAGTAAC 120 67 HPV31REF.1_1_102 AATGCTATTACCCCTGGTGATTGTC CTCCATTAGAATTAAAAAATTCAGT TATACAAGATGGGGATATGGTTG ATACAGGCTTTGGAGCTATGGA 625339_25353838_333048_ CAAATAGAATTACAAATGTCCAAAG 120 67 HPV31REF.1_1_103 GAACATTACTTTTAGTGTCTTGTAA AGCAGTAAAATCCATAGCTCCAAAG CCTGTATCAACCATATCCCCATC TTGTATAACTGAATTTTTT AAT 625339_25353838_333048_ TTTTACTGCTTTACAAGACACTAAA 120 67 HPV31REF.1_1_104 AGTAATGTTCCTTTGGACATTTGTA ATTCTATTTGTAAATATCCAGATTA TCTTAAAATGGTTGCTGAGCCATAT GGCGATACATTATTTTTTTA 625339_25353838_333048_ TCACCAACCGTGCCTGATCTATTAA 120 67 HPV31REF.1_1_105 AAAAATGCCTTACAAACATTTGTTC CCTACGTAAATAAAAAAATAATGTA TCGCCATATGGCTCAGCAACCAT TTTAAGATAATCTGGATATTTA 625339_25353838_333048_ TTTACGTAGGGAACAAATGTTTGTA 120 67 HPV31REF.1_1_106 AGGCATTTTTTTAATAGATCAGGCA CGGTTGGTGAATCGGTCCCTACTGA CTTATATATTAAAGGCTCCGGTT CAACAGCTACTTTAGCTAACAG 625339_25353838_333048_ TTATTAAAAATTTGTGCATCTGAAG 120 67 HPV31REF.1_1_107 TAACCATGGAGCCGCTAGGTGTAGG AAAGTATGTACTGTTAGCTAAAGTA GCTGTTGAACCGGAGCCTTTAA TATATAAGTCAGTAGGGACCGAT 625339_25353838_333048_ TACATACTTTCCTACACCTAGCGGC 120 67 HPV31REF.1_1_108 TCCATGGTTACTTCAGATGCACAAA TTTTTAATAAACCATATTGGATGCA ACGTGCTCAGGGACACAATAATG GTATTTGTTGGGGCAATCAGTT 625339_25353838_333048_ GCAATTGCAGCACAAACAGACATAT 120 67 HPV31REF.1_1_109 TGGTACTACGTGTGGTATCTACCAC AGTAACAAATAACTGATTGCCCCAA CAAATACCATTATTGTGTCCCT GAGCACGTTGCATCCAATATGGT 625339_25353838_333048_ ATTTGTTACTGTGGTAGATACCACA 120 67 HPV31REF.1_1_110 CGTAGTACCAATATGTCTGTTTGTG CTGCAATTGCAAACAGTGATACTAC ATTTAAAAGTAGTAATTTTAAAGA GTATTTAAGACATGGTGAGGA 625339_25353838_333048_ GTCATTATGTCTGCAGATAATGTTA 120 68 HPV31REF.1_1_111 TTTTGCATAACTGAAATATAAATTG TAAATCAAATTCCTCACCATGTCTT AAATACTCTTTAAAATTACTACTTT T AAATGTAGTATCACTGTTT 625339_25353838_333048_ ATTTGATTTACAATTTATATTTCAG 120 68 HPV31REF.1_1_112 TTATGCAAAATAACATTATCTGCAG ACATAATGACATATATTCACAGTAT GAATCCTGCTATTTTGGAAGATTGG AATTTTGGATTGACCACACC 625339_25353838_333048_ TGACATGTAATGGCCTGTGAGGTGA 120 68 HPV31REF.1_1_113 CAAACCTATAGGTATCCTCCAAAGA ACCTGAGGGAGGTGTGGTCAATCCA AAATTCCAATCTTCCAAAATAG CAGGATTCATACTGTGAATATAT 625339_25353838_333048_ TCCCTCAGGTTCTTTGGAGGATACC 120 68 HPV31REF.1_1_114 TATAGGTTTGTCACCTCACAGGCCA TTACATGTCAAAAAACTGCCCCCCA AAAGCCCAAGGAAGATCCATTT AAAGATTATGTATTTTGGGAGGT 625339_25353838_333048_ AAAAATTTGCGACCCAGTGGAAACT 120 68 HPV31REF.1_1_115 GATCTAAATCTGCAGAAAACTTTTC TTTTAAATTAACCTCCCAAAATACA TAATCTTTAAATGGATCTTCCTTG GGCTTTTGGGGGGCAGTTTTT 625339_25353838_333048_ TAATTTAAAAGAAAAGTTTTCTGCA 120 68 HPV31REF.1_1_116 GATTTAGATCAGTTTCCACTGGGTC GCAAATTTTTATTACAGGCAGGATA TAGGGCACGTCCTAAATTTAAAG CAGGTAAACGTAGTGCACCCTC 625339_25353838_333048_ TACATACACATCCATTACTTTTTAG 120 68 HPV31REF.1_1_117 TTTTTTTACGTTTTGCTGGTGTAGT GGTAGATGCTGAGGGTGCACTACGT TTACCTGCTTTAAATTTAGGACGT GCCCTATATCCTGCCTGTAAT 625339_25353838_333048_ AGCATCTACCACTACACCAGCAAAA 120 68 HPV31REF.1_1_118 CGTAAAAAAACTAAAAAGTAAtgga tgtgtatgtaatacatgtgtctgta tgtgtatgtgcttgtgctgtattgt atatgtgtgtgtttgtgtgt 625339_25353838_333048_ AACATACTATACATATATACAAGTA 120 68 HPV31REF.1_1_119 CACACGCATACATAAACATACATAT ACCATATATAACACACAAACACACA CATATACAATACAGCACAAGCACA TACACATACAGACACATGTAT 625339_25353838_333048_ tatatatggtatatgtatgtttatg 120 68 HPV31REF.1_1_120 tatgcgtgtgtacttgtatatatgt atagtatgttatgtgtgtatgtatg ctatgtatgttaataaatatgtgta tacctgtgtgtgttgtgtat 625339_25353838_333048_ GGAACAATAGTTTATAAAATAGTAA 120 69 HPV31REF.1_1_121 TAGTATGTTACTAATAGGGTGTATA TAAGGACAACATACACAACACACAC AGGTATACACATATTTATTAACAT ACATAGCATACATACACACAT 625339_25353838_333048_ GTTGTCCTTATATACACCCTATTAG 120 69 HPV31REF.1_1_122 TAACATACTATTACTATTTTATAAA CTATTGTTCCTACTTGTTCCTACTT GTTCCTGCTCCTCCCAATAGTCATG TACTTATTTCTGCCTATAAT 625339_25353838_333048_ GTAGCTTTAGTTGCAAAAAACGGAC 120 69 HPV31REF.1_1_123 CGGGTGTACAACTTTTACTATGGCG TGACACCTAAATTATAGGCAGAAAT AAGTACATGACTATTGGGAGGA GCAGGAACAAGTAGGAACAAGTA 625339_25353838_333048_ TTAGGTGTCACGCCATAGTAAAAGT 120 69 HPV31REF.1_1_124 TGTACACCCGGTCCGTTTTTTGCAA CTAAAGCTACTCCATTTTGATTTTA TGCAGCCATTTTAAATCCCTAAC CGTTTTCGGTTGCATTGTTTAA 625339_25353838_333048_ TAGTATTCAGGAAACCAAAAACCGC 120 69 HPV31REF.1_1_125 AGAACTACTGCATCAGCATAGTTGT ACTAGCATGTTTAAACAATGCAACC GAAAACGGTTAGGGATTTAAAA TGGCTGCATAAAATCAAAATGGA 625339_25353838_333048_ ACATGCTAGTACAACTATGCTGATG 120 69 HPV31REF.1_1_126 CAGTAGTTCTGCGGTTTTTGGTTTC CTGAATACTAGTTTTTGCCAACATT CTGGCTTGTAGTTTCCTGCCTAA CACACCTTGCCAACATATAATC 625339_25353838_333048_ GTTGAACTACAGTTGTATTTAAACA 120 69 HPV31REF.1_1_127 AACATGATTCATAGTATAATTGCAA AGTTGGACTGGATTATATGTTGGCA AGGTGTGTTAGGCAGGAAACTAC AAGCCAGAATGTTGGCAAAAAC 625339_25353838_333048_ CAGTCCAACTTTGCAATTATACTAT 120 69 HPV31REF.1_1_128 GAATCATGTTTGTTTAAATACAACT GTAGTTCAACTATGTGTCATGCACA TATATTATATTATCCTACACACCTT AAACTGCTTTTAGGCACATA 625339_25353838_333048_ GGCAGTTTAAACATGTGCAAAAGCC 120 69 HPV31REF.1_1_129 AGCACTGCAATCAAGGATATAGATA ATCTACAAAATATGTGCCTAAAAGC AGTTTAAGGTGTGTAGGATAAT ATAATATATGTGCATGACACATA 625339_25353838_333048_ TTTTGTAGATTATCTATATCCTTGA 120 69 HPV31REF.1_1_130 TTGCAGTGCTGGCTTTTGCACATGT TTAAACTGCCAAGGTTGTGTCATGC ATTATAAATAAGTTGTATGTTACT CATATAATTAATTGCATATAG 625339_25353838_333048_ AGTATAAAAAGAACAATTGCTTGTA 120 70 HPV31REF.1_1_131 AAACTGTAACCGAAAACGGTGTAAT ACCTATATGCAATTAATTATATGAG TAACATACAACTTATTTATAATGC   ATGACACAACCTT

HPV33_DoubleStrand_ SEQ SequenceName Sequence Length ID#: 625339_25353839_333049_ GTAAACTATAATGCCAAGTTTTAAA 120 701 HPV33REF.1_1_1 AAAGTAGGGTGTAACCGAAAGCGGT TCAACCGAAAACGGTGCATATATAA AGCAAACATTTTGCAGTAAG GTACTGCACGACTATGTTTCAAGAC 625339_25353839_333049_ GTGTATAGTTGTCTCCAATGCTTGG 120 702 HPV33REF.1_1_2 CACAAATCATGCAATGTTCGTGGTT TTTCCTCAGTGTCTTGAAACATAGT CGTGCAGTACCTTACTGCAA AATGTTTGCTTTATATATGCACCGT 625339_25353839_333049_ ACTGAGGAAAAACCACGAACATTGC 120 703 HPV33REF.1_1_3 ATGATTTGTGCCAAGCATTGGAGAC AACTATACACAACATTGAACTACAG TGCGTGGAATGCAAAAAAC CTTTGCAACGATCTGAGGTATATGA T 625339_25353839_333049_ TTTACATATTCCAAATGGATTTCCC 120 704 HPV33REF.1_1_4 TCTCTATATACAACTGTTAAATCTG CAAATGCAAAATCATATACCTCAGA TCGTTGCAAAGGTTTTTTGCAT TCCACGCACTGTAGTTCAATGTT 625339_25353839_333049_ TTTGCATTTGCAGATTTAACAGTTG 120 705 HPV33REF.1_1_5 TATATAGAGAGGGAAATCCATTTGG AATATGTAAACTGTGTTTGCGGTTC TTATCTAAAATTAGTGAATAT AGACATTATAATTATTCTGTATAT 625339_25353839_333049_ AATACACCTAATTAATATTTCATTT 120 706 HPV33REF.1_1_6 AAAGGTTTTTTAACTGTTTGTTCTA ATGTATTTCCATATACAGAATAATT ATAATGTCTATATTCACTAATTTT AGATAAGAACCGCAAACACAG 625339_25353839_333049_ GGAAATACATTAGAACAAACAGTTA 120 707 HPV33REF.1_1_7 AAAAACCTTTAAATGAAATATTAAT TAGGTGTATTATATGTCAAAGACCT TTGTGTCCTCAAGAAAAAAAAC GACATGTGGATTTAAACAAACGA 625339_25353839_333049_ ACGTCGGGACCTCCAACACGCCGCA 120 708 HPV33REF.1_1_8 CAGCGCCCTGCCCAACGACCCGAAA TATTATGAAATCGTTTGTTTAAATC CACATGTCGTTTTTTTTCTT GAGGACACAAAGGTCTTTGACATAT 625339_25353839_333049_ TTTCATAATATTTCGGGTCGTTGGG 120 709 HPV33REF.1_1_9 CAGGGCGCTGTGCGGCGTGTTGGAG GTCCCGACGTAGAGAAACTGCACTG TGACGTGTAAAAACGCCA TGAGAGGACACAAGCCAACGTTAAA GG 625339_25353839_333049_ CACTTAATTGCTCATAGCAGTATAG 120 710 HPV33REF.1_1_10 GTCAGTTGGTTCAGGATATAAATCT AAAACATATTCCTTTAACGTTGGCT TGTGTCCTCTCATGGCGTTTT TACACGTCACAGTGCAGTTTCTCT 625339_25353839_333049_ AATATGTTTTAGATTTATATCCTGA 120 711 HPV33REF.1_1_11 ACCAACTGACCTATACTGCTATGAG CAATTAAGTGACAGCTCAGATGAGG ATGAAGGCTTGGACCGGCCA GATGGACAAGCACAACCAGCCACAG 625339_25353839_333049_ TGACACATAAACGAACTGTGGTGTT 120 712 HPV33REF.1_1_12 ACAAGTGTGACAACAGGTTACAATG TAGTAATCAGCTGTGGCTGGTTGTG CTTGTCCATCTGGCCGGTC CAAGCCTTCATCCTCATCTGAGCTG T 625339_25353839_333049_ CTGATTACTACATTGTAACCTGTTG 120 713 HPV33REF.1_1_13 TCACACTTGTAACACCACAGTTCGT TTATGTGTCAACAGTACAGCAAGTG ACCTACGAACCATACAGCAA CTACTTATGGGCACAGTGAATATTG 625339_25353839_333049_ TTGTACCTTCAGGATCGGCCATTGT 120 714 HPV33REF.1_1_14 AGATGATGTTTATTGTTGTGCACAG GTAGGGCACACAATATTCACTGTGC CCATAAGTAGTTGCTGTATG GTTCGTAGGTCACTTGCTGTACTGT 625339_25353839_333049_ TGTGCCCTACCTGTGCACAACAATA 120 715 HPV33REF.1_1_15 AACATCATCTACAATGGCCGATCCT GAAGGTACAAATGGGGCTGGGATGG GGTGTACTGGTTGGTTTG AGGTAGAAGCAGTCATAGAGAGAAG AA 625339_25353839_333049_ GTAAATCCGTGCCACTGTCATCTGC 120 716 HPV33REF.1_1_16 TGTTTCATCCTCATCTTCTGAAATA TTATCTCCTGTTCTTCTCTCTATGA CTGCTTCTACCTCAAACCAAC GAGTACACCCCATCCCAGCCCCAT 625339_25353839_333049_ CAGGAGATAATATTTCAGAAGATGA 120 717 HPV33REF.1_1_17 GGATGAAACAGCAGATGACAGTGGC ACGGATTTACTAGAGTTTATAGATG ATTCTATGGAAAATAGTATA CAGGCAGACACAGAGGCAGCCCGGG 625339_25353839_333049_ TTCGTTTTAGTGCACACACAGCATT 120 718 HPV33REF.1_1_18 TAAATCATCCTCCCCTTCCTGTATA TTAAACAATGCCCGGGCTGCCTCTG TGTCTGCCTGTATACTATTTT CCATAGAATCATCTATAAACTCTA 625339_25353839_333049_ CATTGTTTAATATACAGGAAGGGGA 120 719 HPV33REF.1_1_19 GGATGATTTAAATGCTGTGTGTGCA CTAAAACGAAAGTTTGCCGCATGTT CACAAAGTGCTGCGGAGGA CGTTGTTGATCGTGCTGCAAACCCG T 625339_25353839_333049_ GCTCATCTATTTTTCGTTTTCTGTA 120 720 HPV33REF.1_1_20 TGTGCATTCTTTATTTTTATTAATA GACGTTCTACACGGGTTTGCAGCAC GATCAACAACGTCCTCCGCAG CACTTTGTGAACATGCGGCAAACT 625339_25353839_333049_ GTAGAACGTCTATTAATAAAAATAA 120 721 HPV33REF.1_1_21 AGAATGCACATACAGAAAACGAAAA ATAGATGAGCTAGAAGACAGCGGAT ATGGCAATACTGAAGTGGAA ACTCAGCAGATGGTACAACAGGTAG 625339_25353839_333049_ AATCATCCCCCACCCCACTAGATTC 120 722 HPV33REF.1_1_22 TAAGTCATTTAAGTTTGTGTCGCCA TTTTGACTTTCTACCTGTTGTACCA TCTGCTGAGTTTCCACTTCAG TATTGCCATATCCGCTGTCTTCTA 625339_25353839_333049_ AAAGTCAAAATGGCGACACAAACTT 120 723 HPV33REF.1_1_23 AAATGACTTAGAATCTAGTGGGGTG GGGGATGATTCAGAAGTAAGCTGTG AGACAAATGTAGATAGCTG TGAAAATGTTACGTTGCAGGAAATT A 625339_25353839_333049_ AGGCCTCTTTAAATTTATATAATAT 120 724 HPV33REF.1_1_24 ATTTGCTTTTGTATTACTACTATGT AGAACATTACTAATTTCCTGCAACG TAACATTTTCACAGCTATCTAC ATTTGTCTCACAGCTTACTTCTG 625339_25353839_333049_ GTAATGTTCTACATAGTAGTAATAC HPV33REF.1_1_25 AAAAGCAAATATATTATATAAATTT 120 725 AAAGAGGCCTATGGAATAAGTTTTA TGGAATTAGTAAGACCATTTAA AAGTGATAAAACAAGCTGTACAG 625339_25353839_333049_ TTAATACTTTTAAACTTTCTGCTAC HPV33REF.1_1_26 TGATGGACTAATTCCATATCCTGTT 120 726 ATACACCAATCTGTACAGCTTGTTT TATCACTTTTAAATGGTCTTAC TAATTCCATAAAACTTATTCCAT 625339_25353839_333049_ ATTGGTGTATAACAGGATATGGAAT HPV33REF.1_1_27 TAGTCCATCAGTAGCAGAAAGTTTA 120 727 AAAGTATTAATTAAACAGCATAGTT TGTATACTCATTTACAATGTT TAACTTGCGATAGAGGAATAATAA 625339_25353839_333049_ TCATTAGTTTTGCTACTGTTAACCT HPV33REF.1_1_28 GTTTTTGCTACACCTAAATCTAATT 120 728 AACAATAATATTATTATTCCTCTAT CGCAAGTTAAACATTGTAAATGA GTATACAAACTATGCTGTTTAA 625339_25353839_333049_ TATTATTGTTAATTAGATTTAGGTG HPV33REF.1_1_29 TAGCAAAAACAGGTTAACAGTAGCA 120 729 AAACTAATGAGTAATTTATTATCAA TACCTGAAACATGTATGGTTAT AGAGCCACCAAAATTACGGAGCC 625339_25353839_333049_ TACCTTGTACATCACTAATGTTTGA 120 730 HPV33REF.1_1_30 CATTGCTGTTCTAAACCAATACAAT GCACATGTTTGGCTCCGTAATTTTG GTGGCTCTATAACCATACATG TTTCAGGTATTGATAATAAATTAC 625339_25353839_333049_ AAACATGTGCATTGTATTGGTTTAG 120 731 HPV33REF.1_1_31 AACAGCAATGTCAAACATTAGTGAT GTACAAGGTACAACACCTGAATGGA TAGATAGACTAACTGTTTTA CAACATAGCTTTAATGATAATATAT 625339_25353839_333049_ TGTCACTATCGTCCGTTAACTCGTT 120 732 HPV33REF.1_1_32 ATCATATGCCCACTGTACCATTTCA CTTAAATCAAATATATTATCATTAA AGCTATGTTGTAAAACAGTTAG TCTATCTATCCATTCAGGTGTTG 625339_25353839_333049_ TTGATTTAAGTGAAATGGTACAGTG 120 733 HPV33REF.1_1_33 GGCATATGATAACGAGTTAACGGAC GATAGTGACATTGCATATTATTATG CACAACTTGCAGATTCAAAT AGTAATGCTGCTGCATTTTTAAAAA 625339_25353839_333049_ CTTTTTTATAATGTCTACACATTAT 120 734 HPV33REF.1_1_34 TCCACAGTCCTTTACTATTTTTGCT TGTGAGTTACTTTTTAAAAATGCAG CAGCATTACTATTTGAATCTGC AAGTTGTGCATAATAATATGCAA 625339_25353839_333049_ GTAACTCACAAGCAAAAATAGTAAA 120 735 HPV33REF.1_1_35 GGACTGTGGAATAATGTGTAGACAT TATAAAAAAGCAGAAAAACGTAAAA TGTCAATAGGACAATGGATA CAAAGTAGATGTGAAAAAACAAATG 625339_25353839_333049_ CTGTAAATTCAATGTTTTGATATCT 120 736 HPV33REF.1_1_36 TAACAACTGTACTATTGGTCTCCAA TTTCCTCCATCATTTGTTTTTTCAC ATCTACTTTGTATCCATTGTCC TATTGACATTTTACGTTTTTCTG 625339_25353839_333049_ ATGGAGGAAATTGGAGACCAATAGT 120 737 HPV33REF.1_1_37 ACAGTTGTTAAGATATCAAAACATT GAATTTACAGCATTTTTAGGTGCAT TTAAAAAGTTTTTAAAAGGTA TACCAAAAAAAAGCTGTATGCTAA 625339_25353839_333049_ TTAAAAACTGTATTAAACTCATTCC 120 738 HPV33REF.1_1_38 AAAATATGACTTTCCTGTATTTGCT GGTCCACAAATTAGCATACAGCTTT TTTTTGGTATACCTTTTAAAAA CTTTTTAAATGCACCTAAAAATG 625339_25353839_333049_ TTTGTGGACCAGCAAATACAGGAAA 120 739 HPV33REF.1_1_39 GTCATATTTTGGAATGAGTTTAATA CAGTTTTTAAAAGGGTGTGTTATAT CATGTGTAAATTCTAAAAGTC ACTTTTGGTTGCAGCCATTATCAG 625339_25353839_333049_ AATCATCTATATATGTCCAACTTAT 120 740 HPV33REF.1_1_40 TGGCGTTACATCATCTATCATTCCT ATTTTTGCATCTGATAATGGCTGCA ACCAAAAGTGACTTTTAGAATT TACACATGATATAACACACCCTT 625339_25353839_333049_ ATGCAAAAATAGGAATGATAGATGA 120 741 HPV33REF.1_1_41 TGTAACGCCAATAAGTTGGACATAT ATAGATGATTACATGAGAAATGCGT TAGATGGAAATGAAATTTCA ATAGATGTGAAACATAGGGCATTAG 625339_25353839_333049_ TAGAGTCTGTGCCTGCATTTGTATT 120 742 HPV33REF.1_1_42 TGAGGTAAGAAGCAGTGGTGGACAT TTTAATTGCACTAATGCCCTATGTT TCACATCTATTGAAATTTCAT TTCCATCTAACGCATTTCTCATGT 625339_25353839_333049_ TGCAATTAAAATGTCCACCACTGCT 120 743 HPV33REF.1_1_43 TCTTACCTCAAATACAAATGCAGGC ACAGACTCTAGATGGCCATATTTAC ATAGTAGATTAACAGTATTTG AATTTAAAAATCCATTCCCATTTG 625339_25353839_333049_ TTGAGAAAAAGGATTTCCAATTTTC 120 744 HPV33REF.1_1_44 ATCATTTATTGCATACACTGGGTTA CCATTTTCATCAAATGGGAATGGAT TTTTAAATTCAAATACTGTTAA TCTACTATGTAAATATGGCCATC 625339_25353839_333049_ ATGAAAATGGTAACCCAGTGTATGC 120 745 HPV33REF.1_1_45 AATAAATGATGAAAATTGGAAATCC TTTTTCTCAAGGACGTGGTGCAAAT TAGATTTAATAGAGGAAGAG GACAAGGAAAACCATGGAGGAAATA 625339_25353839_333049_ AGTTTTATCAGCTTCGTAAAGATCT 120 746 HPV33REF.1_1_46 AGTATTTTCTCCTGCACTGCATTTA AACGTGCTGATATTTCCTCCATGGT TTTCCTTGTCCTCTTCCTCTA TTAAATCTAATTTGCACCACGTCC 625339_25353839_333049_ TCAGCACGTTTAAATGCAGTGCAGG 120 747 HPV33REF.1_1_47 AGAAAATACTAGATCTTTACGAAGC TGATAAAACTGATTTACCATCACAA ATTGAACATTGGAAACTGAT ACGCATGGAGTGTGCTTTATTGTAT 625339_25353839_333049_ TGCTAACAAAGAAGGCACCACCTGG 120 748 HPV33REF.1_1_48 TGGCATAAATGTGAAAATCCCATTT GTTTGGCTGTATACAATAAAGCACA CTCCATGCGTATCAGTTTCC AATGTTCAATTTGTGATGGTAAATC 625339_25353839_333049_ ACAGCCAAACAAATGGGATTTTCAC 120 749 HPV33REF.1_1_49 ATTTATGCCACCAGGTGGTGCCTTC TTTGTTAGCATCAAAGACCAAAGCA TTTCAAGTAATTGAACTACA AATGGCATTAGAGACATTAAGTAAA 625339_25353839_333049_ ACAAAGCCACACCTCTAAGCTTGTT 120 750 HPV33REF.1_1_50 TGTTGCAATGTCCATTGGCTTGTAC TATACTGTGATTTACTTAATGTCTC TAATGCCATTTGTAGTTCAAT TACTTGAAATGCTTTGGTCTTTGA 625339_25353839_333049_ TCACAGTATAGTACAAGCCAATGGA 120 751 HPV33REF.1_1_51 CATTGCAACAAACAAGCTTAGAGGT GTGGCTTTGTGAACCACCAAAATGT TTTAAAAAACAAGGAGAAAC AGTAACTGTGCAATATGACAATGAC 625339_25353839_333049_ TGTATCTTCCTCTATAATATATATT 120 752 HPV33REF.1_1_52 TCACCCCAGTTTGTATAATCCATTG TATTTTTTTTGTCATTGTCATATTG CACAGTTACTGTTTCTCCTTGTT TTTTAAAACATTTTGGTGGTTC 625339_25353839_333049_ AAAAAAAATACAATGGATTATACAA 120 753 HPV33REF.1_1_53 ACTGGGGTGAAATATATATTATAGA GGAAGATACATGTACTATGGTTACA GGGAAAGTAGATTATATAGGT ATGTATTATATACATAACTGTGAA 625339_25353839_333049_ CCACATTTGTGTTTTAGAATACTTT 120 754 HPV33REF.1_1_54 GCAGCATCCTCTTTAAAATATTTAA AATATACCTTTTCACAGTTATGTAT ATAATACATACCTATATAATCTA CTTTCCCTGTAACCATAGTACA 625339_25353839_333049_ AAGGTATATTTTAAATATTTTAAAG 120 755 HPV33REF.1_1_55 AGGATGCTGCAAAGTATTCTAAAAC ACAAATGTGGGAAGTACATGTGGGT GGTCAGGTAATTGTTTGTCC TACGTCTATATCTAGCAACCAAATA 625339_25353839_333049_ CGCTGCTTGTGGTGGTCGGTTATCG 120 756 HPV33REF.1_1_56 TTGTCTGTCTGTATGTCAGCAGTTT CAGTAGTGGATATTTGGTTGCTAGA TATAGACGTAGGACAAACA ATTACCTGACCACCCACATGTACTT C 625339_25353839_333049_ TCCACTACTGAAACTGCTGACATAC 120 757 HPV33REF.1_1_57 AGACAGACAACGATAACCGACCACC ACAAGCAGCGGCCAAACGACGACGA CCTGCAGACACCACAGAC ACCGCCCAGCCCCTTACAAAGCTGT TC 625339_25353839_333049_ CTTGTTTGTGCAGTTAGTTGCAGTA 120 758 HPV33REF.1_1_58 CGTGCTGTTCTATTGTCCAAGGCGG GGTCTGCACAGAACAGCTTTGTAAG GGGCTGGGCGGTGTCTGT GGTGTCTGCAGGTCGTCGTCGTTTG GC 625339_25353839_333049_ TGTGCAGACCCCGCCTTGGACAATA 120 759 HPV33REF.1_1_59 GAACAGCACGTACTGCAACTAACTG CACAAACAAGCAGCGGACTGTGTGT AGTTCTAACGTTGCACCTA TAGTGCATTTAAAAGGTGAATCAAA T 625339_25353839_333049_ TGACATAGAACTATACAACTCTTTA 120 760 HPV33REF.1_1_60 TAAGGTTTTAATCTGTATCTTAAAC ATTTTAAACTATTTGATTCACCTTT TAAATGCACTATAGGTGCAACG TTAGAACTACACACAGTCCGCTG 625339_25353839_333049_ AGTTTAAAATGTTTAAGATACAGAT 120 761 HPV33REF.1_1_61 TAAAACCTTATAAAGAGTTGTATAG TTCTATGTCATCCACCTGGCATTGG ACCAGTGACAACAAAAATAGT AAAAATGGAATTGTAACTGTAACA 625339_25353839_333049_ CACAGTAGGTGGTATTTTTACGGTA 120 762 HPV33REF.1_1_62 CCTAAAAACATTTGTTGTTGCTGTT CAGTTACAAATGTTACAGTTACAAT TCCATTTTTACTATTTTTGTTG TCACTGGTCCAATGCCAGGTGGA 625339_25353839_333049_ TTTGTAACTGAACAGCAACAACAAA 120 763 HPV33REF.1_1_63 TGTTTTTAGGTACCGTAAAAATACC ACCTACTGTGCAAATAAGTACTGGA TTTATGACATTATAAGTGTAC ATCACAAGCCAATATGTGCTGCTA 625339_25353839_333049_ GATAAGCATAAAAACAATATAAAAC 120 764 HPV33REF.1_1_64 ATAATACAAAAACAAATATCATGGT TATATACAATTAGCAGCACATATTG GCTTGTGATGTACACTTATAAT GTCATAAATCCAGTACTTATTTG 625339_25353839_333049_ ATTGTATATAACCATGATATTTGTT 120 765 HPV33REF.1_1_65 TTTGtattatgttttatattgtttt tatgcttatccttattattaCGTCC TTTAATACTTTCCATTTCTACCTAT GCTTGGTTGCTGGTG TTGGT 625339_25353839_333049_ AACAACAAATAGCAAAAAAAAATTT 120 766 HPV33REF.1_1_66 TTAAAGGAGATCCCACAAACACCCA AAGCAGCAATACCAACACCAGCAAC CAAGCATAGGTAGAAATGGA AAGTATTAAAGGACGTAATAATAAG 625339_25353839_333049_ ATTGCTGCTTTGGGTGTTTGTGGGA 120 767 HPV33REF.1_1_67 TCTCCTTTAAAAATTTTTTTTTGCT ATTTGTTGTTTTTATATTTACCAAT GATGTGTATTAATTTTCATGCA CAGCATATGACACAACAAGAGTA 625339_25353839_333049_ ACAATGTTAAAACACCACCATGTGC 120 768 HPV33REF.1_1_68 ACATATATACAAACAATATATACAT GTATATACATTACTCTTGTTGTGTC ATATGCTGTGCATGAAAATTAA TACACATCATTGGTAAATATAAA 625339_25353839_333049_ ATGTATATAGATGTATATATTGTTT 120 769 HPV33REF.1_1_69 GTATATATGTGGAGATGGTGGTGTT TTAACATTGTTGTTGTTATTTTAGT TTTTTTTTTTTTGTATTAGTAAT AAATACCTTTATATTTTAGCAG 625339_25353839_333049_ TAGTTGTGTTGCAGATGCACGCTTG 120 770 HPV33REF.1_1_70 CGCCTTGTAGATCGTTTGTGTCTCA TAATAATACACTGCTAAAATATAAA GGTATTTATTAGTAATACAAA AAAAAAAAAACTAAAATAACAACA 625339_25353839_333049_ TGTATTATTATGAGACACAAACGAT 120 771 HPV33REF.1_1_71 CTACAAGGCGCAAGCGTGCATCTGC AACACAACTATACCAAACATGCAAG GCCACAGGCACCTGCCCAC CCGATGTTATTCCTAAAGTGGAAGG A 625339_25353839_333049_ TAAACCACCAAAAAAAACCCCTAAA 120 772 HPV33REF.1_1_72 CTGCCATATTTAAGAATTTGATCTG CTATGGTACTTCCTTCCACTTTAGG AATAACATCGGGTGGGCAGG TGCCTGTGGCCTTGCATGTTTGGTA 625339_25353839_333049_ AGTACCATAGCAGATCAAATTCTTA 120 773 HPV33REF.1_1_73 AATATGGCAGTTTAGGGGTTTTTTT TGGTGGTTTAGGTATTGGCACAGGC TCTGGTTCAGGTGGAAGGA CTGGCTATGTACCTATTGGTACTGA C 625339_25353839_333049_ AACAGTGTCTACAGTAACCGGAGGA 120 774 HPV33REF.1_1_74 CGTATAGGCTGCAAGGGGATTGCAG CTGTAGGTGGGTCAGTACCAATAGG TACATAGCCAGTCCTTCC ACCTGAACCAGAGCCTGTGCCAATA CC 625339_25353839_333049_ CCACCTACAGCTGCAATCCCCTTGC 120 775 HPV33REF.1_1_75 AGCCTATACGTCCTCCGGTTACTGT AGACACTGTTGGACCTTTAGACTCG TCTATAGTGTCATTAATAGA AGAAACAAGTTTTATAGAGGCAGGT 625339_25353839_333049_ AGTATCTGCAGATGTAGTAACATCA 120 776 HPV33REF.1_1_76 AAACCTGATGGTGTAGGAATAGATG GGGCTGGTGCACCTGCCTCTATAAA ACTTGTTTCTTCTATTAATG ACACTATAGACGAGTCTAAAGGTCC 625339_25353839_333049_ GCACCAGCCCCATCTATTCCTACAC 120 777 HPV33REF.1_1_77 CATCAGGTTTTGATGTTACTACATC TGCAGATACTACACCTGCAATTATT AATGTTTCATCTGTTGGGGA GTCATCTATTCAAACTATTTCTACA 625339_25353839_333049_ GGCTTCTGCAGGCGCTGGAGGGTGT 120 778 HPV33REF.1_1_78 AGTACAGATGGTTCAGTAAATGTGG GATTTAAATGTGTAGAAATAGTTTG AATAGATGACTCCCCAACA GATGAAACATTAATAATTGCAGGTG T 625339_25353839_333049_ CATTTAAATCCCACATTTACTGAAC 120 779 HPV33REF.1_1_79 CATCTGTACTACACCCTCCAGCGCC TGCAGAAGCCTCTGGACATTTTATA TTTTCTTCCCCTACTGTTAGC ACACAAAGTTATGAAAACATACCA 625339_25353839_333049_ TGGAATGGGCGTGCTTGATGTTACA 120 780 HPV33REF.1_1_80 TTACTACTGTCTGTGGAAACAACAA AGGTATCCATTGGTATGTTTTCATA ACTTTGTGTGCTAACAGTAG GGGAAGAAAATATAAAATGTCCAGA 625339_25353839_333049_ ATGGATACCTTTGTTGTTTCCACAG 120 781 HPV33REF.1_1_81 ACAGTAGTAATGTAACATCAAGCAC GCCCATTCCAGGGTCTCGCCCTGTG GCACGCCTTGGTTTATATA GTCGCAATACCCAACAGGTTAAGGT T 625339_25353839_333049_ AAATGCAGGATTATCATATGTTATA 120 782 HPV33REF.1_1_82 AGTTTATGAGGCGATGTTAAAAAAG CAGGGTCAACAACCTTAACCTGTTG GGTATTGCGACTATATAAAC CAAGGCGTGCCACAGGGCGAGACCC 625339_25353839_333049_ GTTGACCCTGCTTTTTTAACATCGC 120 783 HPV33REF.1_1_83 CTCATAAACTTATAACATATGATAA TCCTGCATTTGAAAGCTTTGACCCT GAAGACACATTACAATTTCAA CATAGTGATATATCACCTGCTCCT 625339_25353839_333049_ ATGTCTACGAGATGTAATAGCAGGC 120 784 HPV33REF.1_1_84 CTATGTAATGCAATAATATCTAGAA AGTCAGGATCAGGAGCAGGTGATAT ATCACTATGTTGAAATTGTA ATGTGTCTTCAGGGTCAAAGCTTTC 625339_25353839_333049_ GATCCTGACTTTCTAGATATTATTG 120 785 HPV33REF.1_1_85 CATTACATAGGCCTGCTATTACATC TCGTAGACATACTGTGCGTTTTAGT AGAGTAGGTCAAAAAGCCAC ACTTAAAACTCGCAGTGGTAAACAA 625339_25353839_333049_ GGTGTGGTCTAAAGGCACAATAGGA 120 786 HPV33REF.1_1_86 CTTAAATCCTGATAATAATGTATTC TAGCTCCAATTTGTTTACCACTGCG AGTTTTAAGTGTGGCTTTTT GACCTACTCTACTAAAACGCACAGT 625339_25353839_333049_ ATTGGAGCTAGAATACATTATTATC 120 787 HPV33REF.1_1_87 AGGATTTAAGTCCTATTGTGCCTTT AGACCACACCGTGCCAAATGAACAA TATGAATTACAGCCTTTACAT GATACTTCTACATCGTCTTATAGT 625339_25353839_333049_ CATTGGGGTGTGTACATTATCCACA 120 788 HPV33REF.1_1_88 TCGTCAGCATAAACATCATACAAAC CATCATTAATACTATAAGACGATGT AGAAGTATCATGTAAAGGCT GTAATTCATATTGTTCATTTGGCAC 625339_25353839_333049_ ATTAATGATGGTTTGTATGATGTTT 120 789 HPV33REF.1_1_89 ATGCTGACGATGTGGATAATGTACA CACCCCAATGCAACACTCATACAGT ACGTTTGCAACAACACGTAC CAGCAATGTGTCTATACCTTTAAAT 625339_25353839_333049_ TGTGGGAAATAAAGGGGAAGGTATA 120 790 HPV33REF.1_1_90 TCAGGGCCAGACATAACAGGAGTAT CAAATCCTGTATTTAAAGGTATAGA CACATTGCTGGTACGTGTT GTTGCAAACGTACTGTATGAGTGTT G 625339_25353839_333049_ ACAGGATTTGATACTCCTGTTATGT 120 791 HPV33REF.1_1_91 CTGGCCCTGATATACCTTCCCCTTT ATTTCCCACATCTAGCCCATTTGTT CCTATTTCGCCTTTTTTTCCT TTTGACACCATTGTTGTAGACGGT 625339_25353839_333049_ TGGAAAACGTTTACGCCTGCGACGT 120 792 HPV33REF.1_1_92 AAAATAAAATAACTAGGATGTAAAA CAAAGTCAGCACCGTCTACAACAAT GGTGTCAAAAGGAAAAAAAG GCGAAATAGGAACAAATGGGCTAGA 625339_25353839_333049_ GCTGACTTTGTTTTACATCCTAGTT 120 793 HPV33REF.1_1_93 ATTTTATTTTACGTCGCAGGCGTAA ACGTTTTCCATATTTTTTTACAGAT GTCCGTGTGGCGGCCTAGTGA GGCCACAGTGTACCTGCCTCCTGT 625339_25353839_333049_ TAATAATAAATGCTTGTGCGAGACA 120 794 HPV33REF.1_1_94 CATATTCATCAGTGCTGACAACTTT AGATACAGGTACAGGAGGCAGGTAC ACTGTGGCCTCACTAGGCC GCCACACGGACATCTGTAAAAAAAT A 625339_25353839_333049_ ACCTGTATCTAAAGTTGTCAGCACT 120 795 HPV33REF.1_1_95 GATGAATATGTGTCTCGCACAAGCA TTTATTATTATGCTGGTAGTTCCAG ACTTCTTGCTGTTGGCCATC CATATTTTTCTATTAAAAATCCTAC 625339_25353839_333049_ ACCCTAAAAACCCTATATTGCAAGC 120 796 HPV33REF.1_1_96 CTGATACTTTGGGTACCAATAATTT TTTAGCGTTAGTAGGATTTTTAATA GAAAAATATGGATGGCCAACA GCAAGAAGTCTGGAACTACCAGCA 625339_25353839_333049_ TAACGCTAAAAAATTATTGGTACCC 120 797 HPV33REF.1_1_97 AAAGTATCAGGCTTGCAATATAGGG TTTTTAGGGTCCGTTTACCAGATCC TAATAAATTTGGATTTCCTGA CACCTCCTTTTATAACCCTGATAC 625339_25353839_333049_ ACGCCTAATGGCTGCCCTCTACCTA 120 798 HPV33REF.1_1_98 TTTCAAGGCCTACACATGCCCATAC TAATCGTTGTGTATCAGGGTTATAA AAGGAGGTGTCAGGAAATC CAAATTTATTAGGATCTGGTAAACG G 625339_25353839_333049_ ACAACGATTAGTATGGGCATGTGTA 120 799 HPV33REF.1_1_99 GGCCTTGAAATAGGTAGAGGGCAGC CATTAGGCGTTGGCATAAGTGGTCA TCCTTTATTAAACAAATTT GATGACACTGAAACCGGTAACAAGT A 625339_25353839_333049_ TGTGTTTGTTTATAATCCATGGATA 120 800 HPV33REF.1_1_100 AACATTCCCTATTATCAGCACCCGG TTGTCCAGGATACTTGTTACCGGTT TCAGTGTCATCAAATTTGTTT AATAAAGGATGACCACTTATGCCA 625339_25353839_333049_ TCCTGGACAACCGGGTGCTGATAAT 120 801 HPV33REF.1_1_101 AGGGAATGTTTATCCATGGATTATA AACAAACACAGTTATGTTTACTTGG ATGTAAGCCTCCAACAGGG GAACATTGGGGTAAAGGTGTTGCTT G 625339_25353839_333049_ TCAATAATAGTATTTATAAGTTCTA 120 802 HPV33REF.1_1_102 AAGGTGGACAATCATTGGCAGGTGC TGCATTAGTACAAGCAACACCTTTA CCCCAATGTTCCCCTGTTGG AGGCTTACATCCAAGTAAACATAAC 625339_25353839_333049_ TACTAATGCAGCACCTGCCAATGAT 120 803 HPV33REF.1_1_103 TGTCCACCTTTAGAACTTATAAATA CTATTATTGAGGATGGTGATATGGT GGACACAGGATTTGGTTGCA TGGATTTTAAAACATTGCAGGCTAA 625339_25353839_333049_ TTTAAATAATCTGGATATTTGCATG 120 804 HPV33REF.1_1_104 TACTGCCACAAATATCAATAGGAAC ATCACTTTTATTAGCCTGCAATGTT TTAAAATCCATGCAACCAAATC CTGTGTCCACCATATCACCATCC 625339_25353839_333049_ TAAAAGTGATGTTCCTATTGATATT 120 805 HPV33REF.1_1_105 TGTGGCAGTACATGCAAATATCCAG ATTATTTAAAAATGACTAGTGAGCC TTATGGTGATAGTTTATTTTT CTTTCTTCGACGTGAACAAATGTT 625339_25353839_333049_ TACAGGTCATCGGGAACAGCCTCTC 120 806 HPV33REF.1_1_106 CTAATGTACCAGCCCTATTAAAAAA GTGTCTTACAAACATTTGTTCACGT CGAAGAAAGAAAAATAAACT ATCACCATAAGGCTCACTAGTCATT 625339_25353839_333049_ TGTAAGACACTTTTTTAATAGGGCT 120 807 HPV33REF.1_1_107 GGTACATTAGGAGAGGCTGTTCCCG ATGACCTGTACATTAAAGGTTCAGG AACTACTGCCTCTATTCAAA GCAGTGCTTTTTTTCCCACTCCTAG 625339_25353839_333049_ GCACGTTGTAGCCAATATGGCTTAT 120 808 HPV33REF.1_1_108 TAAATAACTGAGATTCGGAAGTAAC CATTGATCCACTAGGAGTGGGAAAA AAAGCACTGCTTTGAATAGA GGCAGTAGTTCCTGAACCTTTAATG 625339_25353839_333049_ TGGATCAATGGTTACTTCCGAATCT 120 809 HPV33REF.1_1_109 CAGTTATTTAATAAGCCATATTGGC TACAACGTGCACAAGGTCATAATAA TGGTATTTGTTGGGGCAATC AGGTATTTGTTACTGTGGTAGATAC 625339_25353839_333049_ TTTTTATATGTACTGTCACTAGTTA 120 810 HPV33REF.1_1_110 CTTGTGTGCATAAAGTCATATTAGT ACTGCGAGTGGTATCTACCACAGTA ACAAATACCTGATTGCCCCAA CAAATACCATTATTATGACCTTGT 625339_25353839_333049_ CACTCGCAGTACTAATATGACTTTA 120 811 HPV33REF.1_1_111 TGCACACAAGTAACTAGTGACAGTA CATATAAAAATGAAAATTTTAAAGA ATATATAAGACATGTTGAAGA ATATGATCTACAGTTTGTTTTTCA 625339_25353839_333049_ TCTGGATTCATAGCATGAATATATG 120 812 HPV33REF.1_1_112 TCATAACTTCTGCAGTTAAGGTAAC TTTGCATAGTTGAAAAACAAACTGT AGATCATATTCTTCAACATGT CTTATATATTCTTTAAAATTTTCA 625339_25353839_333049_ ACTATGCAAAGTTACCTTAACTGCA 120 813 HPV33REF.1_1_113 GAAGTTATGACATATATTCATGCTA TGAATCCAGATATTTTAGAAGATTG GCAATTTGGTTTAACACCTCC TCCATCTGCTAGTTTACAGGATAC 625339_25353839_333049_ TTTTCCTTTGGAGGTACTGTTTTTT 120 814 HPV33REF.1_1_114 GACACGTAATAGCCTGAGAGGTAAC AAACCTATAGGTATCCTGTAAACTA GCAGATGGAGGAGGTGTTAA ACCAAATTGCCAATCTTCTAAAATA 625339_25353839_333049_ CTATAGGTTTGTTACCTCTCAGGCT 120 815 HPV33REF.1_1_115 ATTACGTGTCAAAAAACAGTACCTC CAAAGGAAAAGGAAGACCCCTTAGG TAAATATACATTTTGGGAAG TGGATTTAAAGGAAAAATTTTCAGC 625339_25353839_333049_ TTTGCTTTAAGACCTGCCTGTAATA 120 816 HPV33REF.1_1_116 AAAACTTGCGTCCCAAAGGAAACTG ATCTAAATCTGCTGAAAATTTTTCC TTTAAATCCACTTCCCAAAAT GTATATTTACCTAAGGGGTCTTCC 625339_25353839_333049_ AGATTTAGATCAGTTTCCTTTGGGA 120 817 HPV33REF.1_1_117 CGCAAGTTTTTATTACAGGCAGGTC TTAAAGCAAAACCTAAACTTAAACG TGCAGCCCCCACATCCACCC GCACATCGTCTGCAAAACGCAAAAA 625339_25353839_333049_ GTACATAGACAGAACAAAACAACAA 120 818 HPV33REF.1_1_118 CATAACACAATTACACAAAGTGTTA TTTTTTAACCTTTTTGCGTTTTGCA GACGATGTGCGGGTGGATGT GGGGGCTGCACGTTTAAGTTTAGGT 625339_25353839_333049_ GGTTAAAAAATAACACTTTGTGTAA 120 819 HPV33REF.1_1_119 TTGTGTTATGTTGTTGTTTTGTTCT GTCTATGTACTTTGTGTTGTTGTGT TGTGTTGTTGTTTGTTTTTTGT GTATGTGTTACAATGTATGTTAT 625339_25353839_333049_ CAAGTACATAGAACATGCACACAAA 120 820 HPV33REF.1_1_120 CAAGTACACATAAAACAAACACAGT AACATACAACATAACATACATTGTA ACACATACACAAAAAACAAAC AACAACACAACACAACAACACAAA 625339_25353839_333049_ GTTGTATGTTACtgtgtttgtttta 120 821 HPV33REF.1_1_121 tgtgtacttgtttgtgtgcatgttc tatgtacttgtcagtttcctgtttg tgtatatgttAATAAAACATTGTGT GTATTTGTTAAACTATTTGT 625339_25353839_333049_ GGTAGGGCAAGCAATACAACTCCTT 120 822 HPV33REF.1_1_122 ACTCATATAGGTACACCCATATACA TAACATACATACAAATAGTTTAACA AATACACACAATGTTTTATTA ACATATACACAAACAGGAAACTGA 625339_25353839_333049_ ATGTATGTTATGTATATGGGTGTAC 120 823 HPV33REF.1_1_123 CTATATGAGTAAGGAGTTGTATTGC TTGCCCTACCCTGCATTGCAATGTA CCTACCTTTATTTCCCTATAT TTGTAGTACCTACATGTTTAGTAT 625339_25353839_333049_ AGGCATACAAAATGGAGGAAATTGT 120 824 HPV33REF.1_1_124 ACAATATGGACACTAGTATGTCAAA AGGTAAAGCAATACTAAACATGTAG GTACTACAAATATAGGGAAA TAAAGGTAGGTACATTGCAATGCAG 625339_25353839_333049_ TGCTTTACCTTTTGACATACTAGTG 120 825 HPV33REF.1_1_125 TCCATATTGTACAATTTCCTCCATT TTGTATGCCTAACCGTTTTCGGTTA CTTGGCATACATACCCTATGA CATTGGCAGAACAGTTAATCCTTT 625339_25353839_333049_ CAATGTCATAGGGTATGTATGCCAA 120 826 HPV33REF.1_1_126 TGCAGCAAGTACAGACAAACACAGT GCAGGAAAGAAAAGGATTAACTGTT CTGCCAATGTCATAGGGTA TGTATGCCAAGTAACCGAAAACGGT T 625339_25353839_333049_ TCTTTCCTGCACTGTGTTTGTCTGT 120 827 HPV33REF.1_1_127 ACTTGCTGCATTGGCATACATACCC TATGACATTGGCAGAACAGTTAATC CTTTTCTTTCCTGCACTGTGT TTGTCTGTACTTGCTGCATTGACT 625339_25353839_333049_ AAGCATGTGTAAACTATTAGTACAA 120 828 HPV33REF.1_1_128 TTAAGTATTTTGCAATTGCACTGCA TGTATATATGAGTCAATGCAGCAAG TACAGACAAACACAGTGCAG GAAAGAAAAGGATTAACTGTTCTGC 625339_25353839_333049_ CATATATACATGCAGTGCAATTGCA 120 829 HPV33REF.1_1_129 AAATACTTAATTGTACTAATAGTTT ACACATGCTTTTAGGCACATATTTT TACTTTACTTTCAAACCTTAAG TGCAGTTTTGGCTTACACAATTG 625339_25353839_333049_ CACACCTGGTAATAAACAGGTAGTG 120 830 HPV33REF.1_1_130 ACTCACTTTTACAAGGCATAGTTTG GCATACAAAGCAATTGTGTAAGCCA AAACTGCACTTAAGGTTTGA AAGTAAAGTAAAAATATGTGCCTAA 625339_25353839_333049_ CTTTGTATGCCAAACTATGCCTTGT 109 831 HPV33REF.1_1_131 AAAAGTGAGTCACTACCTGTTTATT ACCAGGTGTGGACTAACCGTTTTAG GTCATATTGGTCATTTATAAT CTTTTATATAATA

HPV35_DoubleStrand_ SEQ SequenceName Sequence Length ID#: 625339_25353836_396997_ CCCTATAAAAAAAACAGGGAGTGAC 120 832 HPV35REF.1_1_1 CGAAAACGGTCGTACCGAAAACGGT TGCCATAAAAGCAGAAGTGCACAAA AAAGCAGAAGT GGACAGACATTGTAAGGTGCGGTAT GTTTCAGGA 625339_25353836_396997_ TGGATGCTTTCTTCTACCTCGTTGC 120 833 HPV35REF.1_1_2 ACAAATCATGCAGTTTGTAAGGTCG TTCAGCTGGGTCCTGAAACATACCG CACCTTACAATG TCTGTCCACTTCTGCTTTTTTGTGC ACTTCTGC 625339_25353836_396997_ CCCAGCTGAACGACCTTACAAACTG 120 834 HPV35REF.1_1_3 CATGATTTGTGCAACGAGGTAGAAG AAAGCATCCATGAAATTTGTTTGAA TTGTGTATACTG CAAACAAGAATTACAGCGGAGTGAG GTATATGA 625339_25353836_396997_ ATGCATACTCCATATGGCTGGCCTT 120 835 HPV35REF.1_1_4 CTCTATATACTATACACAAATCATA GCATGCAAAGTCATATACCTCACTC CGCTGTAATTCTT GTTTGCAGTATACACAATTCAAACA AATTTCA 625339_25353836_396997_ CTTTGCATGCTATGATTTGTGTATA 120 836 HPV35REF.1_1_5 GTATATAGAGAAGGCCAGCCATATG GAGTATGCATGAAATGTTTAAAATT TTATTCAAAAATA AGTGAATATAGATGGTATAGATATA GTGTGTA 625339_25353836_396997_ ATACACCTAATTAATAAATGACATA 120 837 HPV35REF.1_1_6 ACTGTTTGTTGCATTGTTTTTCTAA CGTTTCTCCATACACACTATATCTA TACCATCTATATTC ACTTATTTTTGAATAAAATTTTAAA CATTTC 625339_25353836_396997_ TGGAGAAACGTTAGAAAAACAATGC 120 838 HPV35REF.1_1_7 AACAAACAGTTATGTCATTTATTAA TTAGGTGTATTACATGTCAAAAACC GCTGTGTCCAGTT GAAAAGCAAAGACATTTAGAAGAAA AAAAACG 625339_25353836_396997_ CGTGTTGGTTTCCAACAGGACATAC 120 839 HPV35REF.1_1_8 ACCGACCTGTCCACCGTCCACCGAT GTTATGGAATCGTTTTTTTTCTTCT AAATGTCTTTGC TTTTCAACTGGACACAGCGGTTTTT GACATGTA 625339_25353836_396997_ ATTCCATAACATCGGTGGACGGTGG 120 840 HPV35REF.1_1_9 ACAGGTCGGTGTATGTCCTGTTGGA AACCAACACGTAGAGAAACCGAGGT GTAATCATGC ATGGAGAAATAACTACATTGCAAGA CTATGTTTTA 625339_25353836_396997_ CTCTGAGCTGTCACACAATTGCTCA 120 841 HPV35REF.1_110 TAACAGTATAGGTCAGTTGCCTCGG GTTCCAAATCTAAAACATAGTCTTG CAATGTAGTTAT TTCTCCATGCATGATTACACCTCGG TTTCTCTA 625339_25353836_396997_ GATTTGGAACCCGAGGCAACTGACC 120 842 HPV35REF.1_1_11 TATACTGTTATGAGCAATTGTGTGA CAGCTCAGAGGAGGAGGAAGATACT ATTGACGGTCC AGCTGGACAAGCAAAACCAGACACC TCCAATTAT 625339_25353836_396997_ TGTGCTCTGTACACACAGACGTAGT 120 843 HPV35REF.1_1_12 GTCGCCTCACATTTACAACAGGACG TTACAATATTATAATTGGAGGTGTC TGGTTTTGCTTG TCCAGCTGGACCGTCAATAGTATCT TCCTCCTC 625339_25353836_396997_ AATATTGTAACGTCCTGTTGTAAAT 120 844 HPV35REF.1_1_13 GTGAGGCGACACTACGTCTGTGTGT ACAGAGCACACACATTGACATACGT AAATTGGAAGAT TTATTAATGGGCACATTTGGAATAG TGTGCCCC 625339_25353836_396997_ CTCCCCTTCATCTGTACCTGCAGGA 120 845 HPV35REF.1_1_14 TCAGCCATTGTAGATTATGCTCTCT GTGAACAGCCGGGGCACACTATTCC AAATGTGCCCA TTAATAAATCTTCCAATTTACGTAT GTCAATGTG 625339_25353836_396997_ GGCTGTTCACAGAGAGCATAATCTA 120 846 HPV35REF.1_1_15 CAATGGCTGATCCTGCAGGTACAGA TGAAGGGGAGGGGACGGGATGTAAT GGATGGTTTT TTGTAGAAGCAGTAGTTAGTAGACG TACGGGGGAT 625339_25353836_396997_ AAAGTCCACCATATCCTCCCCCCTG 120 847 HPV35REF.1_1_16 TCACAGTCATCTTCATTTTCGTCCT CTGACACTGGATCCCCCGTACGTCT ACTAACTACTGC TTCTACAAAAAACCATCCATTACAT CCCGTCCC 625339_25353836_396997_ CCAGTGTCAGAGGACGAAAATGAAG 120 848 HPV35REF.1_1_17 ATGACTGTGACAGGGGGGAGGATAT GGTGGACTTTATAAATGATACAGAT ATATTAAACAT ACAGGCAGAAACAGAGACAGCACAA GCATTATTT 625339_25353836_396997_ AGCATACTTTCGTTTTAGGACCTGT 120 849 HPV35REF.1_1_18 ACAGCCTCTTTGTGTGTTTGCTCCT CCTGTGCATGAAATAATGCTTGTGC TGTCTCTGTTTC TGCCTGTATGTTTAATATATCTGTA TCATTTAT 625339_25353836_396997_ CATGCACAGGAGGAGCAAACACACA 120 850 HPV35REF.1_1_19 AAGAGGCTGTACAGGTCCTAAAACG AAAGTATGCTAGTAGTCCACTTAGC AGCGTGAGCTT ATGTGTTAATAATAACATAAGTCCA CGTTTAAAA 625339_25353836_396997_ GTCTGGTAGTTCAAATAATCGTCGC 120 851 HPV35REF.1_1_20 TTTGCTGCTGTATTTTTATTTTCAA TGCAAATAGCTTTTAAACGTGGACT TATGTTATTATTAA CACATAAGCTCACGCTGCTAAGTGG ACTACT 625339_25353836_396997_ GCTATTTGCATTGAAAATAAAAATA 120 852 HPV35REF.1_1_21 CAGCAGCAAAGCGACGATTATTTGA ACTACCAGACAGCGGTTATGGCAAT TCTGAAGTGGAA ATACAGCAGATACAACAGGTAGAGG GGCATGAT 625339_25353836_396997_ TCTTTCATCGCTACTAGAGGTTATA 120 853 HPV35REF.1_1_22 CTATCCCCACTGCCCATACTACATT GTTCAACTGTATCATGCCCCTCTAC CTGTTGTATCTGC TGTATTTCCACTTCAGAATTGCCAT AACCGCT 625339_25353836_396997_ ACAGTTGAACAATGTAGTATGGGCA 120 854 HPV35REF.1_1_23 GTGGGGATAGTATAACCTCTAGTAG CGATGAAAGACATGATGAGACTCCA ACGCGAGACAT AATACAAATACTAAAATGTAGTAAT GCAAACGCA 625339_25353836_396997_ TGGTCTAATAAGTTCTGTAAAACTA 120 855 HPV35REF.1_1_24 ATACCAAATAGTTCTTTAAATTTAG CCAACATAGCTGCGTTTGCATTACT ACATTTTAGTATTT GTATTATGTCTCGCGTTGGAGTCTC ATCATG 625339_25353836_396997_ GCTATGTTGGCTAAATTTAAAGAAC 120 856 HPV35REF.1_1_25 TATTTGGTATTAGTTTTACAGAACT TATTAGACCATTTAAGAGTGATAAA TCCACATGTACAG ATTGGTGTGTGGCCGCATTTGGAAT AGCCCCA 625339_25353836_396997_ TTGTATATGTATATATAAACAATAT 120 857 HPV35REF.1_1_26 GGTTTAATTAATGTTTTTAAACTTT CCGCCACACTTGGGGCTATTCCAAA TGCGGCCACACAC CAATCTGTACATGTGGATTTATCAC TCTTAAA 625339_25353836_396997_ AGTGTGGCGGAAAGTTTAAAAACAT 120 858 HPV35REF.1_1_27 TAATTAAACCATATTGTTTATATAT ACATATACAATGTTTATCGTGTTCA TGGGGTATGGTAA TTCTAGCATTATTACGATTTAAATG TGCAAAA 625339_25353836_396997_ CATACTTGCAGCTGAAATACATAGC 120 859 HPV35REF.1_1_28 AATTTTGATAATAGTTTTTCAATTG TTGTTCTGTTTTTTGCACATTTAAA TCGTAATAATGCTA GAATTACCATACCCCATGAACACGA TAAACA 625339_25353836_396997_ AACAGAACAACAATTGAAAAACTAT 120 860 HPV35REF.1_1_29 TATCAAAATTGCTATGTATTTCAGC TGCAAGTATGCTAATACAACCACCA AAATTACGTAGTA CCCCAGCTGCGTTATATTGGTTTAA AACAGCA 625339_25353836_396997_ TACTGTTTGTCTTTGAATCCATTCT 120 861 HPV35REF.1_1_30 GGTGTTTCTCCATCAACCTCACTAA TATTTGACATTGCTGTTTTAAACCA ATATAACGCAGCT GGGGTACTACGTAATTTTGGTGGTT GTATTAG 625339_25353836_396997_ ATGTCAAATATTAGTGAGGTTGATG 120 862 HPV35REF.1_1_31 GAGAAACACCAGAATGGATTCAAAG ACAAACAGTATTACAGCATAGTTTT AATGATGCAATA TTTGACCTATCTGAAATGGTACAAT GGGCATAT 625339_25353836_396997_ AGTTTCTGCCAATTGTGCATATTTA 120 863 HPV35REF.1_1_32 TATGCTATATCACTATCATCTATAA AATCATTGTCATATGCCCATTGTAC CATTTCAGATAGGT CAAATATTGCATCATTAAAACTATG CTGTAA 625339_25353836_396997_ GACAATGATTTTATAGATGATAGTG 120 864 HPV35REF.1_1_33 ATATAGCATATAAATATGCACAATT GGCAGAAACTAATAGTAATGCATGT GCTTllTTAAAAA GTAATTCGCAAGCTAAAATTGTAAA AGATTGT 625339_25353836_396997_ CCACTGTGACATTGTCATTTCTCTT 120 865 HPV35REF.1_1_34 TTTTCAGCTCGTTTATAATGTCTAC ACATTGTTGCACAATCTTTTACAAT TTTAGCTTGCGAAT TACTTTTTAAAAAAGCACATGCATT ACTATT 625339_25353836_396997_ GCAACAATGTGTAGACATTATAAAC 120 866 HPV35REF.1_1_35 GAGCTGAAAAAAGAGAAATGACAAT GTCACAGTGGATTAAAAGGCGATGT GAAAAGGTGGA CGATGACGGTGACTGGAGGGACATA GTACGATTT 625339_25353836_396997_ ATGTAAAAAATTTTTTAGTGCAGAT 120 867 HPV35REF.1_1_36 AAAAATGCCACAAAATcTACTTGTT GATATCTTAAAAATCGTACTATGTc eCTCCAGTCACCG TCATCGTCCACCTTTTCACATCGCC TTTTAAT 625339_25353836_396997_ TTAAGATATCAACAAGTAGATTTTG 120 868 HPV35REF.1_1_37 TGGCATTTTTATcTGCACTAAAAAA TTTTTTACATGGTGTGCCTAAAAAA AATTGCATACTTAT ATATGGAGCACCAAACACAGGTAAA TCATTA 625339_25353836_396997_ TTTAGAATTTACATAGGATATAATA 120 869 HPV35REF.1_1_38 GCTCCTTGTAAGAAATGCATTAGAC TCATTCCAAATAATGATTTACCTGT GTTTGGTGCTCCA TATATAAGTATGCAATTTTTTTTAG GCACACC 625339_25353836_396997_ TTTGGAATGAGTCTAATGCATTTCT 120 870 HPV35REF.1_1_39 TACAAGGAGCTATTATATCCTATGT AAATTCTAAAAGCCATTTTTGGTTG CAGCCATTATATG ATGCCAAAATAGCTATGTTAGATGA TGCTACA 625339_25353836_396997_ AATAGGATTTCCATCTAGTGCATTT 120 871 HPV35REF.1_1_40 CTTAAATATTGGTCTATATATGCCC AACATGGCGATGTAGCATCATCTAA CATAGCTATTTTG GCATCATATAATGGCTGCAACCAAA AATGGCT 625339_25353836_396997_ TCGCCATGTTGGGCATATATAGACC 120 872 HPV35REF.1_1_41 AATATTTAAGAAATGCACTAGATGG AAATCCTATTTCATTAGATGTAAAG CATAAAGCATTAG TGCAATTAAAATGCCCACCTTTACT TATTACA 625339_25353836_396997_ GACCACTACCCTGCTATGTAAGTAT 120 873 HPV35REF.1_1_42 GGCCACCTGTCATCTTTGCCTGCAT TTATATTTGATGTAATAAGTAAAGG TGGGCATTTTAA TTGCACTAATGCTTTATGCTTTACA TCTAATGA 625339_25353836_396997_ TCAAATATAAATGCAGGCAAAGATG 120 874 HPV35REF.1_1_43 ACAGGTGGCCATACTTACATAGCAG GGTAGTGGTCTTTACATTTCACAAT GAATTCCCATTT GATAAAAATGGAAACCCAGTGTATG GGCTTAAT 625339_25353836_396997_ TTCCTCGTGCAAATTTAATCTGCAC 120 875 HPV35REF.1_1_44 CACGTCCTTGAGAAAAAGGATTTCC AGTTTTTATCATTAAGCCCATACAC TGGGTTTCCATTT TTATCAAATGGGAATTCATTGTGAA ATGTAAA 625339_25353836_396997_ GATAAAAACTGGAAATCCTTTTTCT 120 876 HPV35REF.1_1_45 CAAGGACGTGGTGCAGATTAAATTT GCACGAGGAAGAGGACAAAGAAAAT GATGGAGACGC TTTCCCAGCGTTTAAGTGTGTGTCA GGACAAAAT 625339_25353836_396997_ AGTTTCCAATACTGTATGTGATCAG 120 877 HPV35REF.1_1_46 ACAAACATGTGCTATCAGTCTCGTA ATGTTCTAGTATTTTGTCCTGACAC ACACTTAAACGCT GGGAAAGCGTCTCCATCATTTTCTT TGTCCTC 625339_25353836_396997_ ACTAGAACATTACGAGACTGATAGC 120 878 HPV35REF.1_1_47 ACATGTTTGTCTGATCACATACAGT ATTGGAAACTGATTCGTCTTGAATG TGCAGTATTTTAT AAAGCAAGAGAAATGGGAATTAAAA CTCTTAA 625339_25353836_396997_ AGTTCAATTGCTTGCATTGCTTTGG 120 879 HPV35REF.1_1_48 CTTTTGAAATGGCCTGCGTTGGAAC CACTTGGTGGTTAAGAGTTTTAATT CCCATTTCTCTT GCTTTATAAAATACTGCACATTCAA GACGAATC 625339_25353836_396997_ CCACCAAGTGGTTCCAACGCAGGCC 120 880 HPV35REF.1_1_49 ATTTCAAAAGCCAAAGCAATGCAAG CAATTGAACTGCAATTAATGTTAGA GACATTAAATAC AACTGAGTATAGCACAGAAACATGG ACACTGCA 625339_25353836_396997_ ACCCCATGTTTTTTAAAACATCCTT 120 881 HPV35REF.1_1_50 GTGGAACTGTTGTATATAATTCAAT ACTTGTTTCTTGCAGTGTCCATGTT TCTGTGCTATACT CAGTTGTATTTAATGTCTCTAACAT TAATTGC 625339_25353836_396997_ AGAAACAAGTATTGAATTATATACA 120 882 HPV35REF.1_1_51 ACAGTTCCACAAGGATGTTTTAAAA AACATGGGGTTACAGTGGAAGTACA ATTTGATGGTGA TAAACAAAATACTATGCATTATACT AATTGGAC 625339_25353836_396997_ TTATAATTTACCAGTCCCTTTACAA 120 883 HPV35REF.1_1_52 CAGTACATATACTGTCCTCTAATAT ATATATATGTGTCCAATTAGTATAA TGCATAGTATTTTG TTTATCACCATCAAATTGTACTTCC ACTGTA 625339_25353836_396997_ ACATATATATATATTAGAGGACAGT 120 884 HPV35REF.1_1_53 ATATGTACTGTTGTAAAGGGACTGG TAAATTATAAAGGTATTTATTATGT GCATCAGGGTGTA GAAACATATTATGTTACTTTTAGGG AAGAGGC 625339_25353836_396997_ CAAACAATTACCTGACCACCCACAT 120 885 HPV35REF.1_1_54 GCACTTCCCATATATTTTTTTTTCC ATACTTTTTAGCCTCTTCCCTAAAA GTAACATAATATGT TTCTACACCCTGATGCACATAATAA ATACCT 625339_25353836_396997_ TAAAAAGTATGGAAAAAAAAATATA 120 886 HPV35REF.1_1_55 TGGGAAGTGCATGTGGGTGGTCAGG TAATTGTTTGTCCTGAATCTGTATT TAGCAGCACAGA ACTATCCACTGCTGAAATTGCTACA CAGCTACA 625339_25353836_396997_ TGGGTTTCTGTGGTGCCCACGGAGC 120 887 HPV35REF.1_1_56 AGGCTTTGGTATGGGTCTCGGTGGT GTTGTAGGCGTGTAGCTGTGTAGCA ATTTCAGCAG TGGATAGTTCTGTGCTGCTAAATAC AGATTCAGGA 625339_25353836_396997_ CGCCTACAACACCACCGAGACCCAT 120 888 HPV35REF.1_1_57 ACCAAAGCCTGCTCCGTGGGCACCA CAGAAACCCAGAAGACAAATCACAA ACGACTTCGAG GGGGTACCGAGCTCCCCTACAACCC CACCAAGCG 625339_25353836_396997_ GTGCAGTCAGATGTAGAGTAGACCC 120 889 HPV35REF.1_1_58 CTCTGTCAACACTGTCCACGGCACT GAGTCGCACTCGCTTGGTGGGGTTG TAGGGGAGCT CGGTACCCCCTCGAAGTCGTTTGTG ATTTGTCTTC 625339_25353836_396997_ AGTGCGACTCAGTGCCGTGGACAGT 120 890 HPV35REF.1_1_59 GTTGACAGAGGGGTCTACTCTACAT CTGACTGCACAAACAAAGACCGGTG TGGTAGTTGT AGTACAACTACACCTATAGTACATT TAAAAGGTGA 625339_25353836_396997_ TCTTGATACAATGCTTTATATTTAC 120 891 HPV35REF.1_1_60 CCAATCTATATCTTAAACACTTTAA TGTATTTGCATCACCTTTTAAATGT ACTATAGGTGTAGT TGTACTACAACTACCACACCGGTCT TTGTTT 625339_25353836_396997_ TGCAAATACATTAAAGTGTTTAAGA 120 892 HPV35REF.1_1_61 TATAGATTGGGTAAATATAAAGCAT TGTATCAAGATGCTTCATCTACATG GAGATGGACATGT ACAAACGATAAAAAACAAATAGCAA TTGTAAC 625339_25353836_396997_ TTAGGTATTTTTACTGTAGTTAAAA 120 893 HPV35REF.1_1_62 ATTTATCCCTTTGATATTCTGTTGT GTAAGTTAATGTTACAATTGCTATT TGTTTTTTATCGTTT GTACATGTCCATCTCCATGTAGATG AAGCA 625339_25353836_396997_ ATTAACTTACACAACAGAATATCAA 120 894 HPV35REF.1_1_63 AGGGATAAATTTTTAACTACAGTAA AAATACCTAACACAGTTACAGTGTC TAAAGGATATATGT CTATATGATAGACCTTACAGCTTCC AGTACT 625339_25353836_396997_ ACGTACAAGCAGACACAAGCACAAA 120 895 HPV35REF.1_1_64 AGCACACAAAAGCACAACAAAAAGC ACAGCAACACAGTACTGGAAGCTGT AAGGTCTATCA TATAGACATATATCCTTTAGACACT GTAACTGTG 625339_25353836_396997_ GTGTTGCTGTGCTTTTTGTTGTGCT 120 896 HPV35REF.1_1_65 TTTGTGTGCTTTTGTGCTTGTGTCT GCTTGTACGTTCGCTATTGCTATCT GTGTCATTATACT CAGCATTAATATTACTGGTTTTAAT ACTGTGG 625339_25353836_396997_ AGGTATATACAAAAAGCAAAGAAAA 120 897 HPV35REF.1_1_66 CAACAAAAGCAACGTAGTGGTGTTG CTACAGTAACCCACAGTATTAAAAC CAGTAATATTAAT GCTGAGTATAATGACACAGATAGCA ATAGCGA 625339_25353836_396997_ GTTACTGTAGCAACACCACTACGTT 120 898 HPV35REF.1_1_67 GCTTTTGTTGTTTTCTTTGCTTTTT GTATATACCTATGGGAATGATTAAC GCTCATGCACAAT ATTTGGCAGTACAGTAATTGTATAC AAACATT 625339_25353836_396997_ TATACAATGAACAACAAAAAATAAA 120 899 HPV35REF.1_1_68 ACCACCATACACACATGTTACACAG TACCAAACACAATGTTTGTATACAA TTACTGTACTGCC AAATATTGTGCATGAGCGTTAATCA TTCCCAT 625339_25353836_396997_ GTGTTTGGTACTGTGTAACATGTGT 120 900 HPV35REF.1_1_69 GTATGGTGGTTTTATTTTTTGTTGT TCATTGTATATTTTGTTTTTTTACT GTTTTTAAACATTT TTATTTCTGTGTTTTTAATAAATTG ATCACA 625339_25353836_396997_ TGTGTTGCAGATGCACGTTTAACAC 120 901 HPV35REF.1_1_70 GTTTTGTAGACCTTTTGTGTCGCAT GGTTATACCATGTGATCAATTTATT AAAAACACAGAAA TAAAAATGTTTAAAAACAGTAAAAA AACAAAA 625339_25353836_396997_ TGGTATAACCATGCGACACAAAAGG 120 902 HPV35REF.1_1_71 TCTACAAAACGTGTTAAACGTGCAT CTGCAACACAACTATATCGTACTTG CAAAGCTGCAGG AACTTGTCCACCAGATGTTATACCT AAGGTTGA 625339_25353836_396997_ CCCCCAAAAAACACAGCCATGCTGC 120 903 HPV35REF.1_1_72 CATATTTTAAAATTTGATCAGCAAC AGTATTACCCTCAACCTTAGGTATA ACATCTGGTGGA CAAGTTCCTGCAGCTTTGCAAGTAC GATATAGT 625339_25353836_396997_ GGGTAATACTGTTGCTGATCAAATT 120 904 HPV35REF.1_1_73 TTAAAATATGGCAGCATGGCTGTGT TTTTTGGGGGGTTAGGAATTGGTTC TGGATCTGGCA CAGGTGGAAGATCTGGATATGTTCC ACTGGGTAC 625339_25353836_396997_ ATACTTTCCACAGTTACAGGGGGTC 120 905 HPV35REF.1_1_74 GTATAGGAATGTTTGTGGCAGCCGT TGGAGGTGTTGTACCCAGTGGAACA TATCCAGATCT TCCACCTGTGCCAGATCCAGAACCA ATTCCTAAC 625339_25353836_396997_ AACACCTCCAACGGCTGCCACAAAC 120 906 HPV35REF.1_1_75 ATTCCTATACGACCCCCTGTAACTG TGGAAAGTATACCATTAGACACAAT TGGCCCTTTAGA TTCTTCTATAGTGTCATTAGTAGAG GAAACTAG 625339_25353836_396997_ GTAAAACCTGTTGTAGGTGGGACCC 120 907 HPV35REF.1_1_76 TTGGTGTAACAACAGGGGCACCAGA CTCAATAAAACTAGTTTCCTCTACT AATGACACTATA GAAGAATCTAAAGGGCCAATTGTGT CTAATGGT 625339_25353836_396997_ TTTTATTGAGTCTGGTGCCCCTGTT 120 908 HPV35REF.1_1_77 GTTACACCAAGGGTCCCACCTACAA CAGGTTTTACAATAACCACATCTAC AGATACCACACC TGCTATTTTAGATGTGACATCCATA AGTACACA 625339_25353836_396997_ GAAGTTTCTGCAGGCGTGGGTGGGT 120 909 HPV35REF.1_1_78 GTAAAACAGAAGGATCAGTGAAAGT AGGATTATCATGTGTACTTATGGAT GTCACATCTAA AATAGCAGGTGTGGTATCTGTAGAT GTGGTTATT 625339_25353836_396997_ TGATAATCCTACTTTCACTGATCCT 120 910 HPV35REF.1_1_79 TCTGTTTTACACCCACCCACGCCTG CAGAAACTTCAGGTCATTTTGTACT TTCATCATCTTCT ATTAGTACACATAATTATGAAGAAA TCCCTAT 625339_25353836_396997_ CCTGGAATAGGCGTGCTATTAGTTA 120 911 HPV35REF.1_1_80 TATTATTGCTGTCTGTGGAAACAAT AAAAGTATCCATAGGGATTTCTTCA TAATTATGTGTAC TAATAGAAGATGATGAAAGTACAAA ATGACCT 625339_25353836_396997_ GGATACTTTTATTGTTTCCACAGAC 120 912 HPV35REF.1_1_81 AGCAATAATATAACTAATAGCACGC CTATTCCAGGGTCTCGCCCTACGAC ACGCCTAGGATT ATATAGTAAAGGTACCCAGCAGGTT AAGGTTGT 625339_25353836_396997_ TCATATGCAGGATTATCATATGTAA 120 913 HPV35REF.1_1_82 TAAGTTTTGCAGGAGAAGTCATAAA GGCAGGGTCAACAACCTTAACCTGC TGGGTACCTTTA CTATATAATCCTAGGCGTGTCGTAG GGCGAGAC 625339_25353836_396997_ TGACCCTGCCTTTATGACTTCTCCT 120 914 HPV35REF.1_1_83 GCAAAACTTATTACATATGATAATC CTGCATATGAAGGCCTTAACCCTGA TACAACCTTACAA TTTGAGCATGAGGATATTAGCTTAG CTCCGGA 625339_25353836_396997_ GTGCCTTTCCTAGATGTTAGTGCAG 120 915 HPV35REF.1_1_84 GCCTATGTAAAGCTATAATGTCCAT AAAGTCAGGATCCGGAGCTAAGCTA ATATCCTCATGC TCAAATTGTAAGGTTGTATCAGGGT TAAGGCCT 625339_25353836_396997_ TCCTGACTTTATGGACATTATAGCT 120 916 HPV35REF.1_1_85 TTACATAGGCCTGCACTAACATCTA GGAAAGGCACTATTAGATATAGTAG AGTAGGTAATAA ACGTACTATGCATACACGAAGTGGA AAAGCTAT 625339_25353836_396997_ TGTAATTCTATATCTTCAGTAATAC 120 917 HPV35REF.1_1_86 TACTTAAATCCTGATAATAATGTAC CCGTGCCCCTATAGCTTTTCCACTT CGTGTATGCATAG TACGTTTATTACCTACTCTACTATA TCTAATA 625339_25353836_396997_ AGGGGCACGGGTACATTATTATCAG 120 918 HPV35REF.1_1_87 GATTTAAGTAGTATTACTGAAGATA TAGAATTACAACCCTTACAACATGT ACCATCCTCTTTA CCACATACCACTGTTTCAACATCAT TAAATGA 625339_25353836_396997_ GATGCTGAAAATATAATATCTTCCT 120 919 HPV35REF.1_1_88 CAGTATCTATAGGAGCATAAATATC AAACATACCATCATTTAATGATGTT GAAACAGTGGTAT GTGGTAAAGAGGATGGTACATGTTG TAAGGGT 625339_25353836_396997_ TGGTATGTTTGATATTTATGCTCCT 120 920 HPV35REF.1_1_89 ATAGATACTGAGGAAGATATTATAT TTTCAGCATCTTCTAACAATACTTT ATATACTACATCTA ACACTGCATATGTTCCTAGCAATAC TACTAT 625339_25353836_396997_ GAGTTAAATACAATGTCTGGCCCTG 120 921 HPV35REF.1_1_90 CTGTTATAGGAATATCATAGCCACT ACTTAATGGTATAGTAGTATTGCTA GGAACATATGCA GTGTTAGATGTAGTATATAAAGTAT TGTTAGAA 625339_25353836_396997_ ACCATTAAGTAGTGGCTATGATATT 120 922 HPV35REF.1_1_91 CCTATAACAGCAGGGCCAGACATTG TATTTAACTCTAATACTATTACTAA CACTGTACTACCG GTACCCACAGGTCCTATATATTCTA TTATTGC 625339_25353836_396997_ CGTTTACGACGTCGTTTTAATAAAT 120 923 HPV35REF.1_1_92 AATAACTAGGGTGTAAATAAAAGTC ACCCCCATCTGCAATAATAGAATAT ATAGGACCTGTG GGTACCGGTAGTACAGTGTTAGTAA TAGTATTA 625339_25353836_396997_ AGATGGGGGTGACTTTTATTTACAC 120 924 HPV35REF.1_1_93 CCTAGTTATTATTTATTAAAACGAC GTCGTAAACGTATCCCATATTTTTT TGCAGATGTCTCT GTGGCGGTCTAACGAAGCCACTGTC TACCTGC 625339_25353836_396997_ AGATGTTTGTGCGTGTTACATATTC 120 925 HPV35REF.1_1_94 ATCAGTGCTAACAACCTTAGACACT GACACTGGAGGCAGGTAGACAGTGG CTTCGTTAGAC CGCCACAGAGACATCTGCAAAAAAA TATGGGATA 625339_25353836_396997_ CTCCAGTGTCAGTGTCTAAGGTTGT 120 926 HPV35REF.1_1_95 TAGCACTGATGAATATGTAACACGC ACAAACATCTACTATCATGCAGGCA GTTCTAGGCTAT TAGCTGTGGGTCACCCATACTATGC TATTAAAA 625339_25353836_396997_ TAAATACTCTGTATTGCAAACCAGA 120 927 HPV35REF.1_1_96 TACCTTGGGTACTGCTATTTTATTA GAATCTTGTTTTTTAATAGCATAGT ATGGGTGACCCAC AGCTAATAGCCTAGAACTGCCTGCA TGATAGT 625339_25353836_396997_ AACAAGATTCTAATAAAATAGCAGT 120 928 HPV35REF.1_1_97 ACCCAAGGTATCTGGTTTGCAATAC AGAGTATTTAGAGTAAAATTACCAG ATCCTAATAAGTT TGGATTTCCAGACACATCATTTTAT GATCCTG 625339_25353836_396997_ CCAATGGCTGACCACGACCTACTTC 120 929 HPV35REF.1_1_98 AACTCCTGTACAGGCCCAAACCAAA CGCTGGGAGGCAGGATCATAAAATG ATGTGTCTGGA AATCCAAACTTATTAGGATCTGGTA ATTTTACTC 625339_25353836_396997_ CCTCCCAGCGTTTGGTTTGGGCCTG 120 930 HPV35REF.1_1_99 TACAGGAGTTGAAGTAGGTCGTGGT CAGCCATTGGGTGTAGGTATTAGTG GTCATCCTTT ATTAAATAAATTGGATGATACTGAA AATTCTAATA 625339_25353836_396997_ TTTGTTTATAATCCATAGAAATGCA 120 931 HPV35REF.1_1_100 TTCCCTGTTATCTGTACCAGAGTTA CCAACATATTTATTAGAATTTTCAG TATCATCCAATTTA TTTAATAAAGGATGACCACTAATAC CTACAC 625339_25353836_396997_ AATATGTTGGTAACTCTGGTACAGA 120 932 HPV35REF.1_1_101 TAACAGGGAATGCATTTCTATGGAT TATAAACAAACACAATTGTGTTTAA TAGGTTGTAGGC CTCCTATAGGTGAACATTGGGGAAA AGGCACAC 625339_25353836_396997_ CAGTGTTTAGTAACTCCAAAGGAGG 120 933 HPV35REF.1_1_102 ACATTCTCCTGCTTTTACCTGGTTA GCATTACAAGGTGTGCCTTTTCCCC AATGTTCACCTA TAGGAGGCCTACAACCTATTAAACA CAATTGTG 625339_25353836_396997_ CTTGTAATGCTAACCAGGTAAAAGC 120 934 HPV35REF.1_1_103 AGGAGAATGTCCTCCTTTGGAGTTA CTAAACACTGTACTACAAGACGGGG ACATGGTAGAC ACAGGATTTGGTGCAATGGATTTTA CTACATTAC 625339_25353836_396997_ AATCAGGATATTTGCAAATGGAACT 120 935 HPV35REF.1_1_104 GCATATATCTAGGGGAACATCACTT TTATTAGCTTGTAATGTAGTAAAAT CCATTGCACCAAA TCCTGTGTCTACCATGTCCCCGTCT TGTAGTA 625339_25353836_396997_ AAGCTAATAAAAGTGATGTTCCCCT 120 936 HPV35REF.1_1_105 AGATATATGCAGTTCCATTTGCAAA TATCCTGATTATCTAAAAATGGTTT CTGAGCCATATGG AGATATGTTATTTTTTTATTTACGT AGGGAGC 625339_25353836_396997_ CTGCAGGTACTGTTTCACCTACAGT 120 937 HPV35REF.1_1_106 TCCAGCCCTATTAAATAAATGTCTA ACAAACATTTGCTCCCTACGTAAAT AAAAAAATAACAT ATCTCCATATGGCTCAGAAACCATT TTTAGAT 625339_25353836_396997_ AAATGTTTGTTAGACATTTATTTAA 120 938 HPV35REF.1_1_107 TAGGGCTGGAACTGTAGGTGAAACA GTACCTGCAGACCTATATATTAAGG GTACCACTGGCA CATTGCCTAGTACTAGTTATTTTCC TACTCCTA 625339_25353836_396997_ CACGTTGCAACCAATATGGTTTATT 120 939 HPV35REF.1_1_108 AAATATTTGTGCATCGGAGGTTACC ATAGAGCCACTAGGAGTAGGAAAAT AACTAGTACTAG GCAATGTGCCAGTGGTACCCTTAAT ATATAGGT 625339_25353836_396997_ GTGGCTCTATGGTAACCTCCGATGC 120 940 HPV35REF.1_1_109 ACAAATATTTAATAAACCATATTGG TTGCAACGTGCACAAGGCCATAATA ATGGTATTTGTT GGAGTAACCAATTGTTTGTTACTGT AGTTGATA 625339_25353836_396997_ TATATGTACTGTCACTAGAAGACAC 120 941 HPV35REF.1_1_110 AGCAGAACACACAGACATATTTGTA CTACGGGTTGTATCAACTACAGTAA CAAACAATTGGT TACTCCAACAAATACCATTATTATG GCCTTGTG 625339_25353836_396997_ CAACCCGTAGTACAAATATGTCTGT 120 942 HPV35REF.1_1_111 GTGTTCTGCTGTGTCTTCTAGTGAC AGTACATATAAAAATGACAATTTTA AGGAATATTTAAG GCATGGTGAAGAATATGATTTACAG TTTATTT 625339_25353836_396997_ GGTTCATACTATGAATATATGTCAT 120 943 HPV35REF.1_1_112 AACATCTGCTGTTAGTGTTATTTTA CATAACTGAAAAATAAACTGTAAAT CATATTCTTCACCA TGCCTTAAATATTCCTTAAAATTGT CATTTT 625339_25353836_396997_ TTCAGTTATGTAAAATAACACTAAC 120 944 HPV35REF.1_1_113 AGCAGATGTTATGACATATATTCAT AGTATGAACCCGTCCATTTTAGAGG ATTGGAATTTTGG CCTTACACCACCGCCTTCTGGTACC TTAGAGG 625339_25353836_396997_ GTTTTGGTGCACTGGGTTTTTGACA 120 945 HPV35REF.1_1_114 AGTTACAGCCTGTGATGTTACATAG CGATATGTGTCCTCTAAGGTACCAG AAGGCGGTGGT GTAAGGCCAAAATTCCAATCCTCTA AAATGGACG 625339_25353836_396997_ ACACATATCGCTATGTAACATCACA 120 946 HPV35REF.1_1_115 GGCTGTAACTTGTCAAAAACCCAGT GCACCAAAACCTAAAGATGATCCAT TAAAAAATTATAC TTTTTGGGAGGTTGATTTAAAGGAA AAGTTTT 625339_25353836_396997_ CCTTTAGTCCTGCTTGTAACAAAAA 120 947 HPV35REF.1_1_116 TTTACGGCCCAACGGAAATTGATCT AAGTCTGCAGAAAACTTTTCCTTTA AATCAACCTCCCA AAAAGTATAATHTTTAATGGATGAT GTTTAG 625339_25353836_396997_ CTGCAGACTTAGATCAATTTCCGTT 120 948 HPV35REF.1_1_117 GGGCCGTAAATTTTTGTTACAAGCA GGACTAAAGGCCAGGCCTAATTTTA GATTAGGCAAGC GTGCAGCTCCAGCATCTACATCTAA AAAATCTT 625339_25353836_396997_ CACACAGTATACATGCATACACATT 120 949 HPV35REF.1_1_118 TACACATTAACTTTTTACTTTTCTA CGTTTAGTAGAAGATTTTTTAGATG TAGATGCTGGAGC TGCACGCTTGCCTAATCTAAAATTA GGCCTGG 625339_25353836_396997_ CTACTAAACGTAGAAAAGTAAAAAG 120 950 HPV35REF.1_1_119 TTAAtgtgtaaatgtgtatgcatgt atactgtgtgttatgtgttgtagtg cttgtatatatattatgtgttgtgg tgcctgtttgtgttgtACAT 625339_25353836_396997_ ACATACAAAAAACACCCACGTACAA 120 951 HPV35REF.1_1_120 CACATTGCACAATATTATACACACA TTTACACGCCATGTACAACACAAAC AGGCACCACAACA CATAATATATATACAAGCACTACAA CACATAA 625339_25353836_396997_ GGCGTGTAAATGTGTGTATAATATT 120 952 HPV35REF.1_1_121 GTGCAATGTGTTGTACGTGGGTGTT TTTtgtatgtatgttgttgtatgta tgtCAGTACGCAATAAAAGTGA TGTGTGTGTTTATAATTAACACT 625339_25353836_396997_ TATAGCGTGTACTGTAATTATGTAA 120 953 HPV35REF.1_1_122 GTCATATGGGTGCACCCATAGTCAT ACAACAATACAGTGTTAATTATAAA CACACACATCACT TTTATTGCGTACTGACATACATACA ACAACAT 625339_25353836_396997_ GTATTGTTGTATGACTATGGGTGCA 120 954 HPV35REF.1_1_123 CCCATATGACTTACATAATTACAGT ACACGCTATATGTTGTATATAACAA TTCTACCTCCATT TTGTGTGTTAGTGTCCTTTACATTA CCTTTCA 625339_25353836_396997_ TGAGGTAGGAATGTTTTTGTAAAAA 120 955 HPV35REF.1_1_124 ACATATAAAGCTTGCCAACAGCAAC CGAAATCGGTTGAAAGGTAATGTAA AGGACACTAACA CACAAAATGGAGGTAGAATTGTTAT ATACAACA 625339_25353836_396997_ ACCGATTTCGGTTGCTGTTGGCAAG 120 956 HPV35REF.1_1_125 CTTTATATGTTTTTTACAAAAACAT TCCTACCTCAGCAGAACACTTAATC CTTGTGTTCCTGA TATATATTGTTTGCCAACTTTATAT TGGCTTT 625339_25353836_396997_ TGGACCACAAGTATGAAAAATGACT 120 957 HPV35REF.1_1_126 AATACTGCAAGATGAATCAAGTTTA AAGATTGGCAAAAGCCAATATAAAG TTGGCAAACAAT ATATATCAGGAACACAAGGATTAAG TGTTCTGC 625339_25353836_396997_ TGCCAATCTTTAAACTTGATTCATC 120 958 HPV35REF.1_1_127 TTGCAGTATTAGTCATTTTTCATAC TTGTGGTCCACCCACACTTGTAACA CTTGTAACAGTGC TTTTAGGCACATATTTTTTGCATTT CTAAAGG 625339_25353836_396997_ ATGTGTAGGGTGGTGTTGGCAAACA 120 959 HPV35REF.1_1_128 CACATAATATGTAAAGCCAAGTGTG CAATTAAAGCCCTTTAGAAATGCAA AAAATATGTGCC TAAAAGCACTGTTACAAGTGTTACA AGTGTGGG 625339_25353836_396997_ GCTTTAATTGCACACTTGGCTTTAC 120 960 HPV35REF.1_1_129 ATATTATGTGTGTTTGCCAACACCA CCCTACACATCCTGCCAACTTTAAG TTAAAACATGCAT GTAAAACATTACTCACTGTATTACA CATTGTT 625339_25353836_396997_ ATAAAAAGAAATGCTTATAAAACTG 120 961 HPV35REF.1_1_130 TAATCCAAATCGGTTGGACACACCT GTGTGCATATAACAATGTGTAATAC AGTGAGTAATGTT TTACATGCATGTTTTAACTTAAAGT TGGCAGG

Human_12gene_ SEQ panel_SequenceName Sequence Length ID#: 186573_9856646_PTEN.1_1 TCAGCCACAGGCTCCCAGACATGAC 120 962 AGCCATCATCAAAGAGATCGTTAGC AGAAACAAAAGGAGATATCAAGAGG ATGGATTCGACTTAGACTTGACCTG TATCCATTTCTGCGGCTGCT 186573_9856647_PTEN_1 CTTAACTAAAGTACTCAGATATTTA 120 963 TCCAAACATTATTGCTATGGGATTT CCTGCAGAAAGACTTGAAGGCGTAT ACAGGAACAATATTGATGATGTAGT AAGGTAAGAATGCTTTGATT 185573_9856648_PTEN_1 GTTAATGGTGGCTTTTTGTTTGTTT 120 964 GTTTTGTTTTAAGGTTTTTGGATTC AAAGCATAAAAACCATTACAAGATA TACAATCTGTAAGTATGTTTTCTTA TTTGTATGCTTGCAAATATC 186573_9856649_PTEN_1 AAAGATAACTTTATATCACTTTTAA 120 965 ACTTTTCTTTTAGTTGTGCTGAAAG ACATTATGACACCGCCAAATTTAAT TGCAGAGGTAGGTATGAATGTACTG TACTATGTTGTATAACTTAA 186573_9856650_PTEN.1_1 TTGCACAATATCCTTTTGAAGACCA 120 yoo TAACCCACCACAGCTAGAACTTATC AAACCCTTTTGTGAAGATCTTGACC AATGGCTAAGTGAAGATGACAATCA TGTTGCAGCAATTCACTGTA 186573_9856650_PTEN.1_2 AAGCTGGAAAGGGACGAACTGGTGT 120 967 AATGATATGTGCATATTTATTACAT CGGGGCAAATTTTTAAAGGCACAAG AGGCCCTAGATTTCTATGGGGAAGT AAGGACCAGAGACAAAAAGG 186573_9856651_PTEN_1 ATGGAACATTTTTTTTCAATTTGGC 120 968 TTCTCTTTTTTTTCTGTCCACCAGG GAGTAACTATTCCCAGTCAGAGGCG CTATGTGTATTATTATAGCTACCTG TTAAAGAATCATCTGGATTA 186573_9856651_PTEN_2 TAGACCAGTGGCACTGTTGTTTCAC 120 969 AAGATGATGTTTGAAACTATTCCAA TGTTCAGTGGCGGAACTTGCAGTAA GTGCTTGAAATTCTCATCCTTCCAT GTATTGGAACAGTTTTCTTA 18S573_9856652_PTEN_1 CTGTGAAATAATACTGGTATGTATT 120 970 TAACCATGCAGATCCTCAGTTTGTG GTCTGCCAGCTAAAGGTGAAGATAT ATTCCTCCAATTCAGGACCCACACG ACGGGAAGACAAGTTCATGT 186573_9856652_PTEN_2 ACTTTGAGTTCCCTCAGCCGTTACC 120 971 TGTGTGTGGTGATATCAAAGTAGAG TTCTTCCACAAACAGAACAAGATGC TAAAAAAGGTTTGTACTTTACTTTC ATTGGGAGAAATATCCAAAA 186573_9856653_PTEN.1_1 TTTTTAGGACAAAATGTTTCACTTT 120 972 TGGGTAAATACATTCTTCATACCAG GACCAGAGGAAACCTCAGAAAAAGT AGAAAATGGAAGTCTATGTGATCAA GAAATCGATAGCATTTGCAG 186573_9856653_PTEN.1_2 TATAGAGCGTGCAGATAATGACAAG 120 973 GAATATCTAGTACTTACTTTAACAA AAAATGATCTTGACAAAGCAAATAA AGACAAAGCCAACCGATACTTTTCT CCAAATTTTAAGGTCAGTTA 185573_9856654_PTEN_1 TTTTCATTTTAAATTTTCTTTCTCT 120 974 AGGTGAAGCTGTACTTCACAAAAAC AGTAGAGGAGCCGTCAAATCCAGAG GCTAGCAGTTCAACTTCTGTAACAC CAGATGTTAGTGACAATGAA 186573_9856654_PTEN_2 CCTGATCATTATAGATATTCTGACA 120 975 CCACTGACTCTGATCCAGAGAATGA ACCTTTTGATGAAGATCAGCATACA CAAATTACAAAAGTCTGAATTTTTT TTTATCAAGAGGGATAAAAC 186573_9856655_HRAS_1 CGGGGAGCCGGGGTCATCCGGTGGG 120 976 CGTGGCGGCCGCCCTGGGAGTCCCC CTCACCTGCGTCAGGAGAGCACACA CTTGCAGCTCATGCAGCCGGGGCCA CTCTCATCAGGAGGGTTCAG 185573_9856655_HRAS_2 CTTCCGCAGCTTGTGCTGCCGGATC 120 977 TCACGCACCAACGTGTAGAAGGCAT CCTCCACTCCCTGGGAAAGGAGGGA TGGGATCAGGAGGGACCGGCCTGTG GCCGCCTGCCTGGGTGAGGG 185573_9656656_HRAS_1 ACAGCGCGAGGGGCCGCTGGGTCAC 120 978 ATGGGTCCCGGGGGGTCCCAGAGGG TCCCGGAGCTGGAGCTAGAGCCAGA GCGGCTGCCCTGTGTCAAGGGAGAG GGTCAGTGAGTGCTGCTCCC 186573_9856656_HRAS_2 TGGCTGGGGCGGGGCGGGGCGGGTC 120 979 CCTGGCTAGCTGTGGGGTGGAGAGC TGCCTCACCTGCCGGGTCTTGGCCG AGGTCTCGATGTAGGGGATGCCGTA GCTTCGGGCGAGGTCCTGAG 186573_9856656_HRAS_3 CCTGCCGAGATTCCACAGTGCGTGC 120 980 AGCCAGGTCACACTTGTTCCCCACC AGCACCATGGGCACGTCATCCGAGT CCTTCACCCGTTTGATCTGCTCCCT GAGAGGTGGAAAGCGAGAGC 185573_9856657_HRAS_1 GGCTCCCGGGCCAGCCTCACGGGGT 120 981 TCACCTGTACTGGTGGATGTCCTCA AAAGACTTGGTGTTGTTGATGGCAA ACACACACAGGAAGCCCTCCCCGGT GCGCATGTACTGGTCCCGCA 186573_9856657_HRAS_2 TGGCGCTGTACTCCTCCTGGCCGGC 120 982 GGTATCCAGGATGTCCAACAGGCAC GTCTCCCCATCAATGACCACCTGCT TCCGGTAGGAATCCTGCAGGAGGAC AGGGCTCAGGGACCCCCTCA 186573_9856658_HRAS.1_1 TCACCTCTATAGTGGGGTCGTATTC 120 983 GTCCACAAAATGGTTCTGGATCAGC TGGATGGTCAGCGCACTCTTGCCCA CACCGCCGGCGCCCACCACCACCAG CTTATATTCCGTCATCGCTC 186573_9856659_TP53_1 AACAAGAAGTGGAGAATGTCAGTCT 120 984 GAGTCAGGCCCTTCTGTCTTGAACA TGAGTTTTTTATGGCGGGAGGTAGA CTGACCCTTTTTGGACTTCAGGTGG CTGTAGGAGACAGAAGCAGG 186573_9856660_TP53_1 ACTCACCTGGAGTGAGCCCTGCTCC 120 985 CCCCTGGCTCCTTCCCAGCCTGGGC ATCCTTGAGTTCCAAGGCCTCATTC AGCTCTCGGAACATCTCGAAGCGCT CACGCCCACGGATCTGCAGC 186573_9856661_TP531_1 CGTAAGTCAAGTAGCATCTGTATCA 120 986 GGCAAAGTCATAGAACCATTTTCAT GCTCTCTTTAACAATTTTCTTTTTG AAAGCTGGTCTGGTCCTTTAAAATA TATATTATGGTATAAGTTGG 186573.9856662.TP53.1 TAAGAGGTCCCAAGACTTAGTACCT 120 987 GAAGGGTGAAATATTCTCCATCCAG TGGTTTCTTCTTTGGCTGGGGAGAG GAGCTGGTGTTGTTGGGCAGTGCTA GGAAAGAGGCAAGGAAAGGT 185573.9856663.TP53.1 GGCATAACTGCACCCTTGGTCTCCT 120 988 CCACCGCTTCTTGTCCTGCTTGCTT ACCTCGCTTAGTGCTCCCTGGGGGC AGCTCGTGGTGAGGCTCCCCTTTCT TGCGGAGATTCTCTTCCTCT 186573_9856663_TP53_2 GTGCGCCGGTCTCTCCCAGGACAGG 120 989 CACAAACACGCACCTCAAAGCTGTT CCGTCCCAGTAGATTACCACTACTC AGGATAGGAAAAGAGAAGCAAGAGG CAGTAAGGAAATCAGGTCCT 186573_9856664_TP531_1 CTGACCTGGAGTCTTCCAGTGTGAT 120 990 GATGGTGAGGATGGGCCTCCGGTTC ATGCCGCCCATGCAGGAACTGTTAC ACATGTAGTTGTAGTGGATGGTGGT ACAGTCAGAGCCAACCTAGG 186573.9856665.TP53.1 AGACCTCAGGCGGCTCATAGGGCAC 120 991 CACCACACTATGTCGAAAAGTGTTT CTGTCATCCAAATACTCCACACGCA AATTTCCTTCCACTCGGATAAGATG CTGAGGAGGGGCCAGACCTA 186573_985666G_TP53_1 CTGTCGTCTCTCCAGCCCCAGCTGC 120 992 TCACCATCGCTATCTGAGCAGCGCT CATGGTGGGGGCAGCGCCTCACAAC CTCCGTCATGTGCTGTGACTGCTTG TAGATGGCCATGGCGCGGAC 186573.9856666.TP53.2 GCGGGTGCCGGGCGGGGGTGTGGAA 120 993 TCAACCCACAGCTGCACAGGGCAGG TCTTGGCCAGTTGGCAAAACATCTT GTTGAGGGCAGGGGAGTACTGTAGG AAGAGGAAGGAGACAGAGTT 186573_9856667_TPS3_1 CCAGGCATTGAAGTCTCATGGAAGC 120 994 CAGCCCCTCAGGGCAACTGACCGTG CAAGTCACAGACTTGGCTGTCCCAG AATGCAAGAAGCCCAGACGGAAACC GTAGCTGCCCTGGTAGGTTT 18S573_9856667_TP53_2 TCTGGGAAGGGACAGAAGATGACAG 120 995 GGGCCAGGAGGGGGCTGGTGCAGGG GCCGCCGGTGTAGGAGCTGCTGGTG CAGGGGCCACGGGGGGAGCAGCCTC TGGCATTCTGGGAGCTTCAT 186573_9856667_TP53_3 CTGGACCTGGGTCTTCAGTGAACCA 120 996 TTGTTCAATATCGTCCGGGGACAGC ATCAAATCATCCATTGCTTGGGACG GCAAGGGGGACTGTAGATGGGTGAA AAGAGCAGTCAGAGGACCAG 186573.9856668TP531.1 CCTCCAGGTCCCCAGCCCTCCAGGT 120 997 CCCCAGCCCAACCCTTGTCCTTACC AGAACGTTGTTTTCAGGAAGTCTGA AAGACAAGAGCAGAAAGTCAGTCCC ATGGAATTTTCGCTTCCCAC 185573.9856669.TP53.1.1 CCCTTCCAATGGATCCACTCACAGT 120 998 TTCCATAGGTCTGAAAATGTTTCCT GACTCAGAGGGGGCTCGACGCTAGG ATCTGACTGCGGCTCCTCCATGGCA GTGACCCGGAAGGCAGTCTG 18S573.9856670.NFE2L2_1 GGATGTGCTGGGCTGGCTGAATTGG 120 999 GAGAAATTCACCTGTCTCTTCATCT AGTTGTAACTGAGCGAAAAAGGCTT TCTCTTGCTCCTTTTGGAGTTGTTC TTGTCTTTCCTTTTCAAGTT 186573_9856670_NFE2L2_2 TTTTCTGTTTTTCCAGCTCATACTC 120 1000 TTTCCGTCGCTGACTGAAGTCAAAT ACTTCTCGACTTACTCCAAGATCTA TATCTTGCCTCCAAAGTATGTCAAT CAAATCCATGTCCTATGTTT 186573.9856671_CASP8_1 ACTTAGATTATATTCTCCTGCCTTT 120 1001 TAAAAAGATGGACTTCAGCAGAAAT CTTTATGATATTGGGGAACAACTGG ACAGTGAAGATCTGGCCTCCCTCAA GTTCCTGAGCCTGGACTACA 185573_9856671_CASP8_2 TTCCGCAAAGGAAGCAAGAACCCAT 120 1002 CAAGGATGCCTTGATGTTATTCCAG AGACTCCAGGAAAAGAGAATGTTGG AGGAAAGCAATCTGTCCTTCCTGAA GGAGCTGCTCTTCCGAATTA 186573.9856671_CASP8_3 ATAGACTGGATTTGCTGATTACCTA 120 1003 CCTAAACACTAGAAAGGAGGAGATG GAAAGGGAACTTCAGACACCAGGCA GGGCTCAAATTTCTGCCTACAGGTG GGTGGAAACTCCCATTGTGG 186573.9856672.CASP81_1 TCTGTGAATTACTGTGGTATAACGT 120 1004 GACTGTTCAAATTTCACTTTTCAGG GGCTTTGACCACGACCTTTGAAGAG CTTCATTTTGAGATCAAGCCCCACG ATGACTGCACAGTAGAGCAA 186573.9856672.CASP8.1_2 ATCTATGAGATTTTGAAAATCTACC 120 1005 AACTCATGGACCACAGTAACATGGA CTGCTTCATCTGCTGTATCCTCTCC CATGGAGACAAGGGCATCATCTATG GCACTGATGGACAGGAGGCC 186573.9856672.CASP8.1_3 CCCATCTATGAGCTGACATCTCAGT 120 1006 TCACTGGTTTGAAGTGCCCTTCCCT TGCTGGAAAACCCAAAGTGTTTTTT ATTCAGGCTTGTCAGGGGGATAACT ACCAGAAAGGTATACCTGTT 186573.9856672_CASP8.1_4 GAGACTGATTCAGAGGAGCAACCCT 120 1007 ATTTAGAAATGGATTTATCATCACC TCAAACGAGATATATCCCGGATGAG GCTGACTTTCTGCTGGGGATGGCCA CTGTGAATAACTGTGTTTCC 186573.9856672.CASP8.1_5 TACCGAAACCCTGCAGAGGGAACCT 120 1008 GGTACATCCAGTCACTTTGCCAGAG CCTGAGAGAGCGATGTCCTCGGTAA GTTTTGCCTACTCAGCCCTCCTCAC TGTTACACTACCTTCCCCCC 186573.9856673.CASP8.1_1 GCACAGCAGAGGAGACAGTTCATCA 120 1009 GTTGCTTTCCCCCACAGACAGTCAC AATATTATGTGATGTATTTCAGAGG CGATGATATTCTCACCATCCTGACT GAAGTGAACTATGAAGTAAG 186573.9856673.CASP8.1_2 CAACAAGGATGACAAGAAAAACATG 119 1010 GGGAAACAGATGCCTCAGCCTACTT TCACACTAAGAAAAAAACTTGTCTT CCCTTCTGATTGATGGTGCTATTTT GTTTGTTTTGTTTTGTTTT 186573.9856674.MAPK1_1 CTTACCTCGTCACTCGGGTCGTAAT 120 1011 ACTGCTCCAGATATGGGTGGGCCAG AGCCTGTTCTACTTCAATCCTCTTG TGTGGGTTGAATGTCAACATTTTGT CCAATAAGTCCAGAGCTATA 186573.9856675.EP300_1 TAGGAGAGTATACATATCTTACCTC 120 1012 GATAGTGTTCATTTCTTCCGTCCTA AATGCTTGAGGACTGCAGTCTATCA TGAAATCCTAATTGGATATTTAGAA TATGTCAAGAAATTAGGGTA 186573.9856676.PIK3CA_1 AACAATGCCTCCACGACCATCATCA 120 1013 GGTGAACTGTGGGGCATCCACTTGA TGCCCCCAAGAATCCTAGTAGAATG TTTACTACCAAATGGAATGATAGTG ACTTTAGAATGCCTCCGTGA 186573.9856676.PIK3CA_2 GGCTACATTAATAACCATAAAGCAT 120 1014 GAACTATTTAAAGAAGCAAGAAAAT ACCCCCTCCATCAACTTCTTCAAGA TGAATCTTCTTACATTTTCGTAAGT GTTACTCAAGAAGCAGAAAG 186573_9856676_PIK3CA_3 GGAAGAATTTTTTGATGAAACAAGA 120 1015 CGACTTTGTGACCTTCGGCTTTTTC AACCCTTTTTAAAAGTAATTGAACC AGTAGGCAACCGTGAAGAAAAGATC CTCAATCGAGAAATTGGTAT 186573.9856677_PIK3CA.1_1 GTAATTTTATTAAAGGTTTTGCTAT 120 1016 CGGCATGCCAGTGTGTGAATTTGAT ATGGTTAAAGATCCAGAAGTACAGG ACTTCCGAAGAAATATTCTGAACGT TTGTAAAGAAGCTGTGGATC 186573.9856677.PIK3CA.1_2 TTAGGGACCTCAATTCACCTCATAG 120 1017 TAGAGCAATGTATGTCTATCCTCCA AATGTAGAATCTTCACCAGAATTGC CAAAGCACATATATAATAAATTAGA TAAAGGTAAGAAAATGACTA 186573_9856678_P1K3CA1_1 CCCTTGAAAAATGAAAGAGAGATGG 120 1018 TGATTGCATCTAATGTTTTCCTGTT ATAGGGCAAATAATAGTGGTGATCT GGGTAATAGTTTCTCCAAATAATGA CAAGCAGAAGTATACTCTGA 186573_9856678_P1K3CA.1_2 AAATCAACCATGACTGTGTACCACA 120 1019 ACAAGTAATTGCTGAAGCAATCAGG AAAAAAACTCGAAGTATGTTGCTAT CCTCTGAACAACTAAAACTCTGTGT TTTAGAATATCAGGGCAAGT 186573_9856678_PIK3CA.1_3 ATATTTTAAAAGTGTGTGGATGTGA 120 1020 TGAATACTTCCTAGAAAAATATCCT CTGAGTCAGTATAAGGTGAGTAACA AGTTTCAAAATATTAATTTTTAATT TAAAAAGTAATCACATTGAG 186573.9856679.PIK3CA_1 TTACTTTTAAAATGAAAAACCTTAC 120 1021 AGGAAATGGCTCGCCCCCTTAATCT CTTACAGTATATAAGAAGCTGTATA ATGCTTGGGAGGATGCCCAATTTGA TGTTGATGGCTAAAGAAAGC 185573_9856679_PIK3CA_2 CTTTATTCTCAACTGCCAATGGACT 120 1022 GTTTTACAATGCCATCTTATTCCAG ACGCATTTCCACAGCTACACCATAT ATGAATGGAGAAACATCTACAAAAT CCCTTTGGGTTATAAATAGT 186573.9856679.PIK3CA_3 GCACTCAGAATAAAAATTCTTTGTG 120 1023 CAACCTACGTGAATGTAAATATTCG AGACATTGATAAGGTAAAGTCAAAT GCTGATGCTTATTATTTTATAGAAA TTATTTTAGATAACCTTTTT 186573.9856680_P1K3CA.1_1 CTACTTTTTTCTTTTAGATCTATGT 120 1024 TCGAACAGGTATCTACCATGGAGGA GAACCCTTATGTGACAATGTGAACA CTCAAAGAGTACCTTGTTCCAATCC CAGGTAAGGAAGTATATAGA 186573.9856681_PIK3CA.1_1 TACATAGGTGGAATGAATGGCTGAA 120 1025 TTATGATATATACATTCCTGATCTT CCTCGTGCTGCTCGACTTTGCCTTT CCATTTGCTCTGTTAAAGGCCGAAA GGGTGCTAAAGAGGTAAAGT 186573.9856682.PIK3CA_1 GTTTTATAATTTAGACTAGTGAATA 120 1026 TTTTTCTTTGTTTTTTAAGGAACAC TGTCCATTGGCATGGGGAAATATAA ACTTGTTTGATTACACAGACACTCT AGTATCTGGAAAAATGGCTT 186573_9856682.PIK3CA_2 TGAATCTTTGGCCAGTACCTCATGG 120 1027 ATTAGAAGATTTGCTGAACCCTATT GGTGTTACTGGATCAAATCCAAATA AAGTAAGGTTTTTATTGTCATAAAT TAGATATTTTTTATGGCAGT 186573_9856683_PIK3CA_1 AGTCAAACCTTCTCTCTTATGTATA 120 1028 TATAATAGCTTTTCTTCCATCTCTT AGGAAACTCCATGCTTAGAGTTGGA GTTTGACTGGTTCAGCAGTGTGGTA AAGTTCCCAGATATGTCAGT 186573_9856683.PIK3CA_2 GATTGAAGAGCATGCCAATTGGTCT 120 1029 GTATCCCGAGAAGCAGGATTTAGCT ATTCCCACGCAGGACTGGTAAGGCA AATCACTGAGTTTATTAAGTATCAA TTATAATCTGTGGATTTAGG 186573.9856684.PIK3CA_1 ATCCAGAGGGGAAAAATATGACAAA 120 1030 GAAAGCTATATAAGATATTATTTTA TTTTACAGAGTAACAGACTAGCTAG AGACAATGAATTAAGGGAAAATGAC AAAGAACAGCTCAAAGCAAT 186573.9856684.PIK3CA_2 TTCTACACGAGATCCTCTCTCTGAA 120 1031 ATCACTGAGCAGGAGAAAGATTTTC TATGGAGTCACAGGTAAGTGCTAAA ATGGAGATTCTCTGTTTCTTTTTCT TTATTACAGAAAAAATAACT 186573.9856685.PIK3CA_1 TTTTGTTTCTCCCACACAGACACTA 120 1032 TTGTGTAACTATCCCCGAAATTCTA CCCAAATTGCTTCTGTCTGTTAAAT GGAATTCTAGAGATGAAGTAGCCCA GGTAAATGTATGTTTGAGAT 186573_9856686_PIK3CA_1 CCCCTTTAAATATGATTTATTGTCT 120 1033 TTCTCATACACAGATGTATTGCTTG GTAAAAGATTGGCCTCCAATCAAAC CTGAACAGGCTATGGAACTTCTGGA CTGTAATTACCCAGATCCTA 186573_9856686_PIK3CA_2 TGGTTCGAGGTTTTGCTGTTCGGTG 120 1034 CTTGGAAAAATATTTAACAGATGAC AAACTTTCTCAGTATTTAATTCAGC TAGTACAGGTAAAATAATGTAAAAT AGTAAATAATGTTTAATTAC 186573_9856687_PIK3CA_1 TCACCTAGGTCCTAAAATATGAACA 120 1035 ATATTTGGATAACTTGCTTGTGAGA TTTTTACTGAAGAAAGCATTGACTA ATCAAAGGATTGGGCACTTTTTCTT TTGGCATTTAAAGTAAGTCT 186573_9856688_PIK3CA_1_1 TATATATATTTTTAATTTTGCACGA 120 1036 TTCTTTTAGATCTGAGATGCACAAT AAAACAGTTAGCCAGAGGTTTGGCC TGCTTTTGGAGTCCTATTGTCGTGC ATGTGGGATGTATTTGAAGC 186573_9856688_PIK3CA1_2 ACCTGAATAGGCAAGTCGAGGCAAT 120 1037 GGAAAAGCTCATTAACTTAACTGAC ATTCTCAAACAGGAGAAGAAGGATG AAACACAAAAGGTGTGTGACTCTAG TTTGTGTTTGAGACTCTTTT 186573_9856689_PIK3CA_1 AATCAGGTACAGATGAAGTTTTTAG 120 1038 TTGAGCAAATGAGGCGACCAGATTT CATGGATGCTCTACAGGGCTTTCTG TCTCCTCTAAACCCTGCTCATCAAC TAGGAAACCTCAGGTACTTT 186573_9856690_PIK3CA_1 TTCAGGGTAAAATAATAATAAAGCA 120 1039 AAGGTACCTAGTAAAGTTTTTAACT ATTTTAAAGGCTTGAAGAGTGTCGA ATTATGTCCTCTGCAAAAAGGCCAC TGTGGTTGAATTGGGAGAAC 186573_9856690_PIK3CA_2 CCAGACATCATGTCAGAGTTACTGT 120 1040 TTCAGAACAATGAGATCATCTTTAA AAATGGGGATGGTAAGGAAGAGTAT TAATGAGCTTATGATGCATGAATTT AGCTATCTTTTTATACACAG 186573_9856691_PIK3CA_1 ACATATTATTTGAATTTCAGATTTA 120 1041 CGGCAAGATATGCTAACACTTCAAA TTATTCGTATTATGGAAAATATCTG GCAAAATCAAGGTCTTGATCTTCGG TAGGTAACCAGTAAGGCAAC 186573_9856692_P1K3CA_1 TCATTTAATTGTAAACGTGTTACTC 120 1042 CTCTTTCAGAATGTTACCTTATGGT TGTCTGTCAATCGGTGACTGTGTGG GACTTATTGAGGTGGTGCGAAATTC TCACACTATTATGCAAATTC 186573_9856692_PIK3CA_2 AGTGCAAAGGCGGCTTGAAAGGTGC 120 1043 ACTGCAGTTCAACAGCCACACACTA CATCAGTGGCTCAAAGACAAGAACA AAGGAGAAATGTGAGTTGTATTATT CTTTCTTCCTATGTTAATCT 186573_9856693_PIK3CA_1 GATATGATGCAGCCATTGACCTGTT 120 1044 TACACGTTCATGTGCTGGATACTGT GTAGCTACCTTCATTTTGGGAATTG GAGATCGTCACAATAGTAACATCAT GGTGAAAGACGATGGACAAG 186573_9856694_PIK3CA.1_1 ATCTGCATATATCAAACTATAACAT 120 1045 AATTTCTTATTTTTGAAAGCTGTTT CATATAGATTTTGGACACTTTTTGG ATCACAAGAAGAAAAAATTTGGTTA TAAACGAGAACGTGTGCCAT 185573_9856694_PIK3CA.1_2 TTGTTTTGACACAGGATTTCTTAAT 120 1046 AGTGATTAGTAAAGGAGCCCAAGAA TGCACAAAGACAAGAGAATTTGAGA GGTGAGCTCGAGCAATTAAAAACAC AAAATAAAGAGTTCTGGCTG 186573_9856695_PIK3CA.1_1 ACATCATTTGCTCCAAACTGACCAA 120 1047 ACTGTTCTTATTACTTATAGGTTTC AGGAGATGTGTTACAAGGCTTATCT AGCTATTCGACAGCATGCCAATCTC TTCATAAATCTTTTCTCAAT 186573_9856695_PIK3CA.1_2 GATGCTTGGCTCTGGAATGCCAGAA 120 1048 CTACAATCTTTTGATGACATTGCAT ACATTCGAAAGACCCTAGCCTTAGA TAAAACTGAGCAAGAGGCTTTGGAG TATTTCATGAAACAAATGAA 186573_9856695_PIK3CA.1_3 TGATGCACATCATGGTGGCTGGACA 120 1049 ACAAAAATGGATTGGATCTTCCACA CAATTAAACAGCATGCATTGAACTG AAAAGATAACTGAGAAAATGAAAGC TCACTCTGGATTCCACACTG 185573_9856696_FBXW7.1_1 ATCTTACCTGTAATGAATAGACTCT 120 1050 ATTAGTATGCCCCTGCAACGTGTGT AGACAGGTTTCAGTCTCTGGATCCC ACACCTTTACCATAAAATCATATGC TCCACTAACAACCCTCCTGC 18S573_9856696_FBXW7.1_2 CATCATATTGAACACAGCGGACTGC 120 1051 TGCAACATGACCCATCAAAACATGT AAACACTGGCCTGTCTCAATATCCC AAACCCTAAGAGTGGCATCTCGAGA ACCGCTAACAACTCTGCAGA 186573_9856697_TERT_1 CTGCGCAGCAGGGAGCGCACGGCTC 120 1052 GGCAGCGGGGAGCGCGCGGCATCGC GGGGGTGGCCGGGGCCAGGGCTTCC CACGTGCGCAGCAGGACGCAGCGCT GCCTGAAACTCGCGCCGCGA 186573_9856697_TERT_2 GGAGAGGGCGGGGCCGCGGAAAGGA 120 1053 AGGGGAGGGGCTGGGAGGGCCCGGA GGGGGCTGGGCCGGGGACCCGGGAG GGGTCGGGACGGGGCGGGGTCCGCG CGGAGGAGGCGGAGCTGGAA 186573_9856698_CDKN2A_1 ACAAATTCTCAGATCATCAGTCCTC 120 1054 ACCTGAGGGACCTTCCGCGGCATCT ATGCGGGCATGGTTACTGCCTCTGG TGCCCCCCGCAGCCGCGCGCAGGTA CCGTGCGACATCGCGATGGC 186573_9856698_CDKN2A_2 CCAGCTCCTCAGCCAGGTCCACGGG 120 1055 CAGACGGCCCCAGGCATCGCGCACG TCCAGCCGCGCCCCGGCCCGGTGCA GCACCACCAGCGTGTCCAGGAAGCC CTCCCGGGCAGCGTCGTGCA 186573_9856698_CDKN2A_3 CGGGTCGGGTGAGAGTGGCGGGGTC 120 1056 GGCGCAGTTGGGCTCCGCGCCGTGG AGCAGCAGCAGCTCCGCCACTCGGG CGCTGCCCATCATCATGACCTGCCA GAGAGAACAGAATGGTCAGA 186573_9856699_CDKN2A_1 GAGTCGCCCGCCATCCCCTGCTCCC 120 1057 GCTGCAGACCCTCTACCCACCTGGA TCGGCCTCCGACCGTAACTATTCGG TGCGTTGGGCAGCGCCCCCGCCTCC AGCAGCGCCCGCACCTCCTC 186573_9856699_CDKN2A_2 TACCCGACCCCGGGCCGCGGCCGTG 120 1058 GCCAGCCAGTCAGCCGAAGGCTCCA TGCTGCTCCCCGCCGCCGGCTCCAT GCTGCTCCCCGCCGCCCGCTGCCTG CTCTCCCCCTCTCCGCAGCC 185573_9856700_CDKN2A_1 GGACTTTTCGAGGGCCTTTCCTACC 120 1059 TGGTCTTCTAGGAAGCGGCTGCTGC CCTAGACGCTGGCTCCTCAGTAGCA TCAGCACGAGGGCCACAGCGGCGGG CGCCCCTGGCGCTGCCCACT 186573_9856700_CDKN2A_2 CCCCCGTGAGCCGCGGGATGTGAAC 120 1060 CACGAAAACCCTCACTCGCGGCGGG CCGCACGCGCGCCGAATCCGGAGGG TCACCAAGAACCTGCGCACCATGTT CTCGCCGCCTCCAGGGCCGA 186573_9856701_NOTCH1_1 GGTTTCCCGCCCTGGCCCCGGCCGA 120 1061 CGCACCGGGCATGCAGATGCACTGG AACTCCCCAATCTGGTCCAGGCAGG TGGCGTCGTTCTGGCACGGGTTCGA GACGCACTCGTTGACGTCGA 186573_9856701_NOTCH1_2 TCTCGCATCGGGGGCCCGTGTAGCC 120 1062 CTGCAGACACTGGCACTCGAAGGAG CCCAGCGTGTTGATGCACTTGCCCG CATGCTCGCAGGGGTTGGCACCTGG CGAGGGCACACGGGTGAGAG 186573_9856702_NOTCH1_1 GCGGCCATGGGGACACTCGCAGTAG 120 1063 AAGGAGGCCACACGGTCATGGCAGG TGGCGCCGTGGAAGCAGGCGGCGCT GGCACAGTCATCAATGTTCTCGCTG CAGTCCTCACCAGTCCAGCC 186573_9856702_NOTCH1_2 GTTGACACACACGCAGTTGTAGCCA 120 1064 CCGTGGGTGTTGTGGCAGGTCCCGC CGTTCTGGCAGGCATTTGGCATCAG CTGGCACTCGTCCACATCCTCGGTA CAGTACTGACCTGCAGGGAA 

1. A method for capturing circulating tumor DNA (ctDNA) of interest from an animal sample, preferably a mammalian sample, further preferably a human patient sample, comprising cell-free DNA (cfDNA), the method comprising: adding to the patient sample a library of nucleic acid hybrid capture probes, wherein the library of probes is complementary to both strands of the double stranded ctDNA of interest and the probes are tagged for capture; allowing the probes to hybridize to the ctDNA; and capturing the hybridized ctDNA using the tag on the probes.
 2. The method of claim 1, further comprising polymerase chain reaction (PCR) assembly to detect a specific ctDNA of interest.
 3. The method of claim 1, further comprising sequencing the captured ctDNA.
 4. The method of claim 3, wherein the sequencing comprises next-generation sequencing.
 5. The method of claim 4, wherein the next-generation sequencing comprises Illumina, Roche 454, or Ion Torrent Sequencing.
 6. The method of claim 1, wherein the probes complementary to one strand of the ctDNA are offset by 40-60% from the probes complementary to other strand.
 7. The method of claim 6, wherein the probes complementary to one strand of the ctDNA are offset by 50% from the probes complementary to other strand.
 8. The method of claim 1, wherein the probes are 50 bp to 160 bp in length.
 9. The method of claim 8, wherein the probes are between 80 bp to 160 bp in length.
 10. The method of claim 9, wherein the probes are between 100 bp and 140 bp in length.
 11. The method of claim 10, wherein the probes are about 120 bp in length.
 12. The method of claim 1, wherein the ctDNA of interest corresponds to a mutation of interest.
 13. The method of claim 1, wherein the ctDNA of interest corresponds to a virus, preferably an oncogenic virus.
 14. The method of claim 13, wherein the oncogenic virus is selected from the group consisting of human papillomavirus (HPV), Epstein-Barr virus (EBV), Kaposi's sarcoma-associated herpesvirus (KSHV), human T-lymphotropic virus (HTLV), or Merkle cell polyomavirus (MCV).
 15. The method of claim 14, wherein the oncogenic virus is human papillomavirus (HPV).
 16. The method of claim 1, wherein the library of probes covers substantially the entire genome of the oncogenic virus.
 17. The method of claim 1, further comprising at least one of determining the fragment length of the ctDNA, genotyping the ctDNA, and mapping location of the ctDNA to the genome.
 18. The method of claim 1, wherein the patient sample is selected from the group consisting of peripheral blood serum or plasma, urine, saliva, breast milk, cerebrospinal fluid, and synovial fluid.
 19. The method of claim 18, wherein the patient sample is peripheral blood plasma.
 20. The method of claim 1, for detecting cancer.
 21. The method of claim 1, for monitoring cancer therapy. 22-32. (canceled) 